Showing 89 open source projects for "algorithm"

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  • 1
    TreeLayout

    TreeLayout

    Efficient and customizable TreeLayout Algorithm in Java, for NetBeans

    Efficiently create compact, highly customizable tree layouts - Based on Walker's algorithm with enhancements suggested by Buchheim, Jünger, and Leipert the software builds tree layouts in linear time. I.e. even trees with many nodes are built fast. Downloads are available at https://sourceforge.net/projects/treelayout/files/. For detailed documentation look at the TreeLayout web site http://treelayout.sourceforge.net/. Development for TreeLayout has moved to https://github.com/abego...
    Downloads: 0 This Week
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  • 2

    chipexo

    model based analysis of ChIP-exo data

    Here we developed a novel analysis framework named MACE (model-based analysis of ChIP-exo) dedicated to ChIP-exo data analysis. MACExo has the following four steps: 1) sequencing data normalization and bias correction; 2) signal consolidation and noise reduction; 3) single nucleotide resolution border detection using Chebyshev Inequality; and 4) border matching using Gale-Shapley’s stable matching algorithm. When applied to yeast Reb1 and human CTCF ChIP-exo data, MACE is able to define TFBSs...
    Downloads: 0 This Week
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  • 3
    New CTruck3D Rally

    New CTruck3D Rally

    Free-roaming 3D racing game featuring advanced terrain rendering

    It's a free-roaming 3D racing game featuring advanced terrain rendering. For small file-size, a 4k x 4k terrain is available, sampled meter-by-meter so it's very smooth. Lightweight program. This is the form in which I wished to do the first release of the terrain rendering Algorithm I have developed throughout almost 2 years. Written in C++, featuring multithreading (2 threads): a total remake of the first 3D game I did years ago, CTruck3D_Simplex and sequels. This works better...
    Downloads: 1 This Week
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  • 4

    ThermV

    Comprehensive thermal analysis software package

    ThermV thermal analysis software package aims to provide the most sophisticated automatic analysis of thermal analysis data (TG/DTG, DTA and DSC). It offers new algorithm for concurrent peak deconvolution at different heating rates and provides full kinetic analysis of these data, including isoconversional methods for Ea, determination of reaction model and full kinetic triplet, Avrami coefficients, and dimensionality of crystal growth for reactions in the solid state. The project...
    Downloads: 0 This Week
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  • 5

    Ezys

    Ezys 3D medical image registration program

    Ezys is a non-linear 3D medical image registration program. Ezys fully exploits the parallel computing power of inexpensive commercial graphics processing units (GPU), resulting in a very fast and accurate program capable of running on desktop PCs and even some laptops. On these systems, non-linear image registrations take less than a minute to complete. Ezys implements a diffeomorphic inverse consistent image registration algorithm with a demons-style regularization based on a non-parametric...
    Downloads: 0 This Week
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  • 6
    Impact Finite Element Program
    Impact is an explicit Finite Element Program Suite which simulates dynamic impact events. It has a range of elements, contact handling and different material laws. Models can be created, solved and analyzed with the included pre- and postprocessor. Impact is based on an Explicit Time stepping algorithm. These kind of codes are used to simulate dynamic phenomena such as car crashes and similar, usually involving large deformations.
    Downloads: 15 This Week
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  • 7

    iOVFDT

    iOVFDT algorithm of incremental decision tree

    ... incrementally optimized very fast decision tree (iOVFDT). Inheriting the use of Hoeffding bound in VFDT algorithm for node-splitting check, it contains four optional strategies of functional tree leaf, which improve the classifying accuracy. In addition, a multi-objective incremental optimization mechanism investigates a balance among accuracy, mode size and learning speed...
    Downloads: 0 This Week
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  • 8

    PythonStatsLab

    A collection of useful statistical functions written in Python

    ... (Riemann sum, Simpson's method, Taylor expansion, etc.) that can be employed in this task, which I hope to add soon. Projected Future Improvements: -Estimation with 2 means -Student's t-distribution -Hart's algorithm for integrating CDF
    Downloads: 0 This Week
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  • 9
    CAPLET

    CAPLET

    GDS visualization and parallelized capacitance extraction

    Project CAPLET is a capacitance extraction toolkit that extract capacitance at field-solver accuracy. CAPLET can directly handle GDS2 layout files into capacitance matrices in both GUI and command line interfaces. The internal extraction algorithm is specialized for VLSI interconnect structures but not exclusively, as long as the structure is of Manhattan geometry and embedded in a uniform dielectric material.
    Downloads: 0 This Week
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  • 10
    LAVA for AFM

    LAVA for AFM

    Lloyd's Algorithm-based Volumetric Analysis for AFM Images

    This MATLAB-based program enables analysis of AFM images. In particular, it allows the user to measure the volume of all distinguishable features in an image and to isolate and sort those particles. As the name implies, LAVA uses Lloyd's Algorithm, also known as k-means sorting, to identify a small set of volumes representative of the actual distribution of particle in the image. Although developed for determining feature volume, LAVA is also completely compatible with other types of image...
    Downloads: 0 This Week
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  • 11
    GPU Edge Detector

    GPU Edge Detector

    GPU Interactive Program For Edge detection

    This is a standalone, all in one Edge Detector that is mainly running on GPU using the CUDA technology. Each algorithm also has an OpenCV counterpart which is the closest one in terms of speed. This project is partly based on the Sobel Filter sample available as part of the CUDA SDK. This project also partly uses the OpenCV library to load different types of image. This program includes: Prewitt filter, Roberts Cross, Canny edge detector and finally Sobel filter with the ability to modify...
    Downloads: 0 This Week
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  • 12

    MolBioLib

    C++11 framework for rapid develop and deploy of bioinformatic tasks.

    ..., ranging from alignment data to annotations. MolBioLib includes programs to perform a wide variety of analysis tasks such as computing read coverage, annotating genomic intervals, and novel peak calling with a wavelet algorithm. While MolBioLib was designed primarily for bioinformatics purposes, much of its functionality is applicable to a wide range of problems. Complete documentation and an extensive automated test suite are provided. This package assumes fluency in both UNIX and C++.
    Downloads: 0 This Week
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  • 13
    Darwin 2: Java Framework for Evolutionary Computation (genetic algorithm, GA). A true framework with out-of-the-box functionality and extensibility of all classes. Interface-based pattern with dependency-injection to configure components.
    Downloads: 0 This Week
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  • 14

    Galois sub-hierarchy builder

    Visualize Galois sub-hierarchy of 2d matrix

    GSH builder is a free Galois Sub-Hierarchy visualization tool. The algorithm for calculating GSH is called Pluton and the present Java realization is based on two articles. "Efficiently computing a linear extension of the sub-hierarchy of a Concept Lattice" by Anne Berry, Marianne Huchard, Ross M. McConnell, Alain Sigayret and Jeremy P. Spinrad. "Performances of Galois Sub-hierarchy-building algorithms" by Gabriela Arevalo, Anne Berry, Marianne Huchard, Guillaume Perrot...
    Downloads: 0 This Week
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  • 15
    j-Algo is an algorithm visualization tool, especially useful for students and lecturers of computer science. It is written in Java and platform independent. j-Algo is developed at Dresden University of Technology.
    Downloads: 2 This Week
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  • 16
    iefmirashow
    Displays a selection of dust type mira fractals one after the other in colour rather like a slide show. This simple fractal demonstration uses the SDL graphics library and the dust type fractal algorithm, mira.
    Downloads: 0 This Week
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  • 17
    Extremely Lightweight Beat Detection Algorithm - BeatDetektor uses a very simple statistical model designed from scratch by myself to detect the BPM of music and provides real-time feedback useful for visualization and synchronization.
    Downloads: 0 This Week
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  • 18
    CEGA
    CEGA is a highly extendable layout plugin for Cytoscape based on an Evolutionary Algorithm. In contrast to other layout algorithms, CEGA lets users decide which features are important for the visualization of their graphs.
    Downloads: 0 This Week
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  • 19
    jg3d
    Pure Java implementation of an interactive 3d graph rendering engine and editor using a spring embedder algorithm. Nice looking sterile real time 3d environment. Feel free to extend our project and build something awesome, just let us know please :D
    Downloads: 0 This Week
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  • 20
    This application is a tree algorithms visualizator. The user can create his own tree of a certain type (among binary, binary search, and red black), his algorithm and then can observe the execution in real time of his algorithm on his tree.
    Downloads: 0 This Week
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  • 21
    An implementation of Bruhn et al.'s fast variational optical flow algorithm using the OpenCV image processing library. The code calculates dense flow fields with a user-specified level of precision.
    Downloads: 0 This Week
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  • 22
    PGAF provides a framework tuned, user-specific genetic algorithms by handling I/O, UI, and parallelism. It is designed for optimizing functions that take a "very long time" to evaluate.
    Downloads: 0 This Week
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  • 23
    AlViz is a research prototype for visual ontology alignment implemented as multiple-view plug-in for Protege using J-Trees and Graphs. Based on similarity measures of an ontology matching algorithm AlViz helps to assess and optimize the alignment results
    Downloads: 0 This Week
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  • 24
    Java package to study a clustering model described in the paper \"Novel Clustering Algorithm Based Upon Games on Evolving Network\" by Q. Li, Z. Chen, Y. He and J-P. Jiang (in arxiv: http://arxiv.org/pdf/0812.5064v1), generalizations and similar issues.
    Downloads: 0 This Week
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  • 25
    Orthogonal (a.k.a manhattan) line routing is a technique for rendering a human-readable hierarchical diagram. Manhattanlines implements an orthogonal line routing algorithm that minimizes line length and crossings.
    Downloads: 0 This Week
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