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QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. It is maintained by the Gurevich lab at HIPS (https://helmholtz-hips.de/en/hmsb). For the most up-to-date description, please visit http://quast.sf.net. Below are just some highlights. QUAST computes several well-known metrics, including contig accuracy, the number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and manual). A...

...To get you started, author Jeroen Janssens provides a Docker image packed with over 100 Unix power tools, useful whether you work with Windows, macOS, or Linux. You’ll quickly discover why the command line is an agile, scalable, and extensible technology. Even if you’re comfortable processing data with Python or R, you’ll learn how to greatly improve your data science workflow by leveraging the command line’s power.

Spark Notebook is an interactive web-based computational notebook designed to make working with Apache Spark more productive, exploratory, and expressive. It allows developers, data scientists, and analysts to write, run, and visualize Spark code in cells that support multiple languages such as Scala, Python, and SQL, all within the same notebook. Users can interleave runnable code, rich text markup, visualizations, equations, and results, enabling reproducible research and exploratory data analysis workflows. Because it runs on top of Spark’s distributed engine, it can scale from running locally on a laptop to executing on clusters with large datasets without changing user workflow. ...

A data science IDE for Python. RODEO, that is an open-source python IDE and has been brought up by the folks at yhat, is a development environment that is lightweight, intuitive and yet customizable to its very core and also contains all the features mentioned above that were searched for so long. It is just like your very own personal home base for exploration and interpretation of data that aims at Data Scientists and answers the main question, "Is there anything like RStudio for Python?"...