Search Results for "link management"
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Showing 19 open source projects for "link management"
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Gephi
Gephi the open graph Viz platform
Gephi is the leading visualization and exploration software for all kinds of graphs and networks. Gephi is open-source and free. Gephi is an award-winning open-source platform for visualizing and manipulating large graphs. It runs on Windows, Mac OS X and Linux. Localization is available in English, French, Spanish, Japanese, Russian, Brazilian Portuguese, Chinese, Czech and German. Fast Powered by a built-in OpenGL engine, Gephi is able to push the envelope with very large networks.... -
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Tree Visualisation with Visual Cues
Tree Visualisation with Visual Cues
This project extends a previous work on node link tree visualisation and interaction by providing visual clues on hidden structures. We adopt DOITree from Prefuse package (https://github.com/prefuse/Prefuse), a multi-focal tree layout algorithm, for exploring large hierarchical structures. Related publications: https://www.sciencedirect.com/science/article/pii/S1045926X1630009X https://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=6902871 -
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MarDRe
MapReduce-based tool to remove duplicate DNA reads
MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems.... -
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HSRA
Hadoop spliced read aligner for RNA-seq data
HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a... -
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DSTK - Data Science TooKit 3
Data and Text Mining Software for Everyone
DSTK - Data Science Toolkit 3 is a set of data and text mining softwares, following the CRISP DM model. DSTK offers data understanding using statistical and text analysis, data preparation using normalization and text processing, modeling and evaluation for machine learning and algorithms. It is based on the old version DSTK at https://sourceforge.net/projects/dstk2/ DSTK Engine is like R. DSTK ScriptWriter offers GUI to write DSTK script. DSTK Studio offers SPSS Statistics like GUI... -
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Bias is a cross-platform versatile information management application / Organizer
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DSTK - DataScience ToolKit
DSTK - DataScience ToolKit for All of Us
DSTK - DataScience ToolKit is an opensource free software for statistical analysis, data visualization, text analysis, and predictive analytics. Newer version and smaller file size can be found at: https://sourceforge.net/projects/dstk3/ It is designed to be straight forward and easy to use, and familar to SPSS user. While JASP offers more statistical features, DSTK tends to be a broad solution workbench, including text analysis and predictive analytics features. Of course you may specify... -
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Universal Java Matrix Package
sparse and dense matrix, linear algebra, visualization, big data
The Universal Java Matrix Package (UJMP) is an open source Java library which provides sparse and dense matrix classes, as well as a large number of calculations for linear algebra such as matrix multiplication or matrix inverse. Operations such as mean, correlation, standard deviation, replacement of missing values or the calculation of mutual information are supported, too. The Universal Java Matrix Package provides various visualization methods, import and export filters for a large... -
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JBerd
Java tools for decoding and manipulating BER encoded ASN.1 Files
A simple Java ASN BER decoder and profiler A tool for easy manipulation of BER encoded files. An "awk" for ASN.1 BER (for Unix people) or maybe a "notepad" for ASN.1 BER (for Windows people). Jberd (Java BER decoder) is a lightweight BER decoder and associated tools for interpreting and processing BER encoded ASN.1 files. The following facilities are provided: • JBerd Profiler. A tool for profiling the contents of BER encoded files • JBerd Flattener. A tool for converting BER... -
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HEIMDALL
High-End Interface for Monitoring & spatial Data Analysis using L2Norm
HEIMDALL, short for High-End Interface for Monitoring and spatial Data Analysis using L2-Norm, is a set of public libraries written in JAVA which contains routines and algorithms for geodetic hardware connection. To observe objects (in general spatial points) continuous, HEIMDALL’s programmable logic arrays can be used to design monitoring systems. For data analysis an interface to the least-squares program JAG3D can be provided. The serial communication with e.g. inclination sensors,... -
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Java GUI Framework seeks to simplify the development procedures of Java GUI ,which can directly collect data for the object model from input interface and seamlessly link up ORM technology.
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Evoker is a graphical tool for plotting genotype intensity data in order to assess quality of genotype calls. It implements a compact, binary format which allows rapid access to data, even with hundreds of thousands of observations. PLEASE NOTE: This source repository is no longer active. See the github link above for the latest version.
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A plugin for the VANTED system, called Glyph-based Link Exploration of Pathways (GLIEP). It helps to guide the navigation and exploration process of interconnected pathway visualization as well as insight into the overall interconnectivity.
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JBELT : link your design to the business
JBelt :: link your design to the business
JBELT is a collection of procedure to create a PLM system oriented to connect the CAD application to the ERP database. Based on the web. The engine are JBoss, PostgreSQL and developed in Java on JBoss Seam framework. -
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Facelift is a visualization and analysis software for online social networking services. It displays a given community as a node-link diagram and provides several search / filtering functions as well as cluster analysis features.
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Code libraries and media files contributed by Whoola, Inc. Includes Whoola Cyberspace, a virtual reality web browser with fly-through hyperlinks. The source code includes a COLLADA loader for Xith. Click on the "Home Page" link above to install.
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HyperSpider (Java app) collects the link structure of a website. Data import/export from/to database and CSV-files. Export to Graphviz DOT, Resource Description Framework (RDF/DC), XML Topic Maps (XTM), Prolog, HTML. Visualization as hierarchy and map.
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DagMap Vis is a java application aims to visualize DAGs (Directed Acyclic Graph) with a combine node link diagram and an adapted treemap layout. Based on prefuse, the application gives some useful interactions to navigate in hierarchical data structures.
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