Showing 11 open source projects for "console command"

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  • 1

    MarDRe

    MapReduce-based tool to remove duplicate DNA reads

    MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems....
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  • 2

    HSRA

    Hadoop spliced read aligner for RNA-seq data

    HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a...
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  • 3
    Marid

    Marid

    Free data acquisition and data visualization cross-platform software

    Marid is a cross-platform data acquisition and visualization software intended to build complex and hierarchical data acquisition systems. The base concepts of its architecture include: * Graphical deploy configuration builders * Powerful Groovy scripting language * Embedded database ( H2 , HSQLDB) to store data * Cross-platform design (write once, run anywhere) * Embedded GUI-configurable binary/ascii device protocol parser/generator * Deploy manager to deploy firmwares to remote...
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  • 4

    RSS Atom Feed Analytics With MapReduce

    This is a data analytics project for RSS feeds using hadoop MapReduce

    This project accepts the output of jatomrss project as the input. It applies the MR logic on the same to perform the analytics
    Downloads: 0 This Week
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  • 5
    Visualization of Protein-Ligand Graphs

    Visualization of Protein-Ligand Graphs

    Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools

    NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/
    Downloads: 0 This Week
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  • 6

    Informatica DBMetadata

    Java utility that reads the metadata from table(s)

    Dbmetadata is a Java utility that reads the metadata from table(s) in a specified database and creates the Informatica XML to import into the repository. I created this utility when we were migrating to a new platform and needed a quick way to create flatfile and relational sources and targets that matched the DDL of the table. I also needed to use shortcuts. If you use the import table list, it will create one XML file with all of the tables and shortcuts (if a shortcut folder is specified)...
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  • 7
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  • 8
    KETL(tm) is a production ready ETL platform. The engine is built upon an open, multi-threaded, XML-based architecture. KETL's is designed to assist in the development and deployment of data integration efforts which require ETL and scheduling
    Downloads: 21 This Week
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  • 9
    Cartocraft is a simple top-down, orthogonal Minecraft map renderer with ambient occlusion and lighting.
    Downloads: 2 This Week
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  • 10
    Sanchay
    Sanchay is a collection of tools and APIs for language researchers. It has some implementations of NLP algorithms, some flexible APIs, several user friendly annotation interfaces and Sanchay Query Language for language resources.
    Downloads: 0 This Week
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  • 11
    Open Migrate is an open source framework which facilitates content migration between enterprise content management repositories.
    Downloads: 0 This Week
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