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ProteinArchitect facilitates the visual exploration of the architecture of proteins, including conserved domains, secondary structure elements and structurally flexible regions, e.g. in the context of the analysis of protein superfamilies.
JisM is a multi-threads program allowing users to perform segmentation's tasks on a picture. Users could add new segmentation methods as JisM's plugins. Plugins can be written in Java or in Python.
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The aDORe Federation is a standards-based federated repository framework and reference implementation which aims to address many of the scalability issues experienced by large scale digital object repositories.
An Open DataBase Project developed in Java, PHP and Javascript and using MySQL to enable customized queries in Brazilian Researchers Lattes Database and still providing geographic representation at Google Maps.
JNeuron is an analysis tool for multi-neuronal spike train analysis. The tool will allow scientists to organize their spike train data analysis into projects. The tool will implement standard spike train analysis algorithms and also datamining algorithms
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DagMap Vis is a java application aims to visualize DAGs (Directed Acyclic Graph) with a combine node link diagram and an adapted treemap layout. Based on prefuse, the application gives some useful interactions to navigate in hierarchical data structures.
GraphScript project is a network theory simulator based purely on Java and Java scripting engines.
It is intended to allow fast development, testing and visualization of network theory (graph) algorithms.
Implementation of a bidirectional bridge between Sun SPOTs and virtual Spaughts in SecondLife using XML-RPC between Java (spot-side) and C# (libsecondlife on SL-side).
BIRBU (BIological Relationship BUilder) is a Java tool for microarray gene expression data analysis. BIRBU identifies biologically significant relationship between genes using microarray data and prior knowledge on relationships between genes.
Synesketch is a software library with synesthetic abilities, made for Processing digital artists. Its code serves as a medium between words, emotions, and images. Synesketch homepage: http://synesketch.krcadinac.com
Basic life is an application that desires to simulate basic life based on some basic chemistry/physics rules. This environment provides particles that can bond, vibrate, react, etc. in order to create basic cells
jlpv is a Java Light PACS Viewer application useful for review series or images from DICOM data retrieved from the DCM4CHEE PACS system. It also uses ImageJ as a rendering engine or viewer. This project is in a early stage.
VisTer is system for terrain and landscapes visualization. It is graphical scene editor with built-in java3d renderer, which may be used in your java3d application. VisTer is based on plug-in system, so you can easily develope and test our own algorithms
An Expert Search System for Enterprise Search based on the Information Retrieval Vector Space Model. Our model builds a weighted profile for each candidate and keeps all the documents, thus allowing to retrieve both people and documents together.
The project aim is to create the 3D simulation of robot-arm which moves on three axis. It's based on real robot- dual arm that can solve Rubic Cube. It's gonna be implemented using openGL in Java Applet and will be awesome=)
A very flexible and extendable Java layout engine that uses XML to render Java user interface components and separate the data model from visualization.
Simple GUI tool for creating and manipulating WSN topologies
TOPO is a simple tool that allows the user to create and manipulate arbitrary Wireless Sensor Network (WSN) topologies without worrying about the anomalies that could arise using a text-base topology description. It is fast and easy to use and can accelerate small scale projects such as network simulation.
The tool is still undergoing development stage and is open to extension. One the candidate component to be soon integrated is a WSN discrete event simulator.