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Openminer, as a data mining engine, is developed on java for analysis of dataset with the methods of data mining. By making use of openminer, we could discovery the knowledge which interests us but hides in the raw data.
GSCope3 performs microarray data analysis to find correlations between BLSOM clusters and any form of omic knowledge expressed in OSML. Includes example metabolic pathway, gene ontology, genome position, transcription and PPI knowledge in OSML format.
This navigation tool for the site http://www.software-kompetenz.de visualizes a connection graph of articles in a knowledge database. It is a project of the Software Systems Engineering Research Group at the BTU Cottbus and cooperating partners.
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OWL Interactive is a visualization environment to graphically and interactively display contents of OWL ontologies. It represents concept and their interrelationships based on the knowledge representation (KR) primitives defined by OWL ontology language.
Thea, Tools for High-throughput Experiment Analysis, is an integrated information processing system dedicated to the annotation of data issued from classification systems with biological information coming from a knowledge base.
The Enterprise Knowledge Base (EKB) from ModelDriven.org is a repository for enterprise knowledge: metadata, planning and governance. The EKB can manage and transform both structured and unstructured data as files, Eclipse-EMF or RDF ontologies.
Interlogy - next generation knowledge storage and prezentation system. Gives wide functionality for knwoledge evaluation. Interlogy is the same as forum, wiki, chat, socialnetwork, but all together.
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MongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
BIRBU (BIological Relationship BUilder) is a Java tool for microarray gene expression data analysis. BIRBU identifies biologically significant relationship between genes using microarray data and prior knowledge on relationships between genes.
The Integrative Biology VRE is a web-based graphical user interface and repository that provides an environment where biological simulation experiments can be constructed without the need for any knowledge of unix, cluster computing, or shell scripting.