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BPMspace is open for extensions and free to use. BPMspace connects business processes with each other, similar to a relational database. Learn how to build/model a CMS and CMDB: http://www.mitsm.de/schulungen/spezial-schulungen/itil-cmdb-modellierung-und-konzeption
JMagallanes is an open source end user application for Olap and Dynamic Reports written in Java/J2EE. Combines static reports, pivot table and charts. It reads from SQL and other data sources.
Webcockpit is a Web Application Generator for realtime charting and monitoring solutions. Generates JSP code to create chart images and HTML tables from SQL queries. Supports Drill-Down and pluggable look&feel. Uses JFreeChart, Displaytag and Cewolf.
The Integrative Biology VRE is a web-based graphical user interface and repository that provides an environment where biological simulation experiments can be constructed without the need for any knowledge of unix, cluster computing, or shell scripting.