Open Source Java Data Management Systems - Page 11

Merging neuronal nets with attractor visualisation to show the unknown particle, which makes travel much faster. https://projects.zoho.com/portal/surfingjoomla#myworkcalendar

Zephyr is a script-driven experiment automation program that works various measurement instruments and actuators. It supports instruments from Agilent, Eco Physics, ICS Electronics, Keithley, Omega, Teledyne and other manufacturers. The script language is XML-based. Syntax highlighting is available. The source code is included in the distribution. Contact the project admin to get SVN access.

@rbre uses X3D to let people create, visualize, browse and share genealogical data, by using 2D individual icons assembled in 3D family trees. @rbre will include P2P functions for sharing.

Coding convenient Aero & Astro functions into one easy to use package. From rocket engine design, to flight and space dynamics.

Automatic Report Generator is a mini-ETL API which allows to retrieve data through an SQL query towards a structured file, would it be a CSV, XLSX, or XML. This API also supports BIRT reports, and, in this case, its respective template is required. The project is available on Maven: https://mvnrepository.com/artifact/net.sf.automatic-report-generator Version 3: https://mvnrepository.com/artifact/net.sf.ennahdi.automatic-report-generator Checkout the documentation for both version 2 and version 3: https://sourceforge.net/p/automatic-report-generator/wiki/Home/

Autoplot is an interactive browser for data on the web. Give Autoplot a URL or local file name and it creates a sensible plot of the data. Autoplot allows you to interactively browse data stored in ascii, .cdf, netcdf, and many other formats. Autoplot's source has been moved to GitHub. Thanks to SourceForge for many years of hosting!

This software allows SAP BW web reports to be printed out directly from a web browser. It allows both fit to page and tile over multiple page options fully controlled by the user.

The Bamformatics project aims to provide a coherent and consistent approach to analysis of high-throughput sequencing data. Its toolkit includes, among others, programs to identify variants and to compute various types genomic tracks. It also provides a graphical user interface to facilitate general bioinformatic workflows. The project wiki contains further details.

The purpose of the project is to develop a quantitative medical imaging & visualization program for use on brain MR, DTI and MRS data. It is a joint project of the Kennedy Krieger Institute & the Johns Hopkins University, Psychiatric Neuroimaging Lab

Imagine being able to extract from your Enterprise Content Management System, all the metadata of your documents using simple queries with a query language very close to the traditional SQL. Imagine using the information extracted for statistical purposes, for creating reports and, more generally, to analyse your document archives in a way unthinkable until now with the current tools available. All this is possible within the Pentaho Suite, the Open Source Business Intelligence platform, which is useful to the extraction and analysis of structured and semi-structured data. With this goal (the extraction and analysis of data) has been designed and developed the CMIS Input plugin for Pentaho Data Integration (Kettle) that allows querying Content Management Systems that use the CMIS interoperability standard. The data, once extracted, can be stored and analyzed and perhaps presented in customized reports be published in various formats for the end user (PDF, Excel, etc..).

Goal of our project CSX (City Stats X) is to program a generic interface to visualize and present social data about a city. We will present this on the example of the city of Linz in Austria.

The aim of the cardiac atlas project is to establish a structural and functional atlas of the heart. This project is funded by the NIH grant and led by the University of Auckland, New Zealand.

===== Project moved to https://github.com/fpetitjean/Chordalysis ===== Log-linear analysis is the statistical method used to capture multi-way relationships between variables. However, due to its exponential nature, previous approaches did not allow scale-up to more than a dozen variables. We present here Chordalysis, a log-linear analysis method for big data. Chordalysis exploits recent discoveries in graph theory by representing complex models as compositions of triangular structures, also known as chordal graphs. Chordalysis makes it possible to discover the structure of datasets with thousands of variables on a standard desktop computer. Associated papers at ICDM 2013, ICDM 2014 and SDM 2015 can be found at http://www.francois-petitjean.com/Research/ YourKit is supporting Chordalysis open source project with its full-featured Java Profiler. YourKit is the creator of innovative and intelligent tools for profiling Java and .NET applications. http://www.yourkit.com

This is educational software whose purpose it is to clarify the workings of different clustering algorithms by visualising the clustering process in 2D space. This make many possible problems and advantages very clear.

Cube Platform is a decentralized grid computing system that uses P2P Pastry protocol for communication between nodes. It's a big data storage written in Java.

Darwin 2: Java Framework for Evolutionary Computation (genetic algorithm, GA). A true framework with out-of-the-box functionality and extensibility of all classes. Interface-based pattern with dependency-injection to configure components.

The Databionics ESOM Tools offer many data mining tasks using Emergent Self-Organizing Maps. Visualization, clustering, and classification of high-dimensional data using databionics principles can be performed interactively or automatically.

Eviewbox is a java imaging suite, its purpose is to view and spread native DICOM medical images and allowing for 2D reconstructions. EViewbox applet will allow to see the DICOM images on every platform.

FrAid(FRactal AID) is an interface to Java, allowing it to proc. math. data(functions/equations). A compl. standalone system utilizing the FrAid prog. lang. is available(no need to be Java programmer to use it!). Use instead of Matlab. High res. graphics

Gavrog stands for "Generation, Analysis and Visualization of Reticular Ornaments using Gavrog". It is a Java library together with a suite of interactive applications for the study of periodic net-like structures in space and their applications.

The Generation5 Java Development Kit (JDK) enables users to create demonstration programs and applets for a wide variety of Artificial Intelligence and Artificial Life paradigms.

A "gumbo" of tools and concepts supporting rich client applications with 2D/3D user interfaces. Expands on the code from the book "3D User Interfaces with Java 3D", and includes a generous contribution of RCP code from Meyer Sound. Recent work includes a Norden bombsight simulator, with terrain rendering based on NASA's WorldWind SDK. For this effort YourKit has generously made available its full-featured Java Profiler (https://www.yourkit.com/java/profiler/index.jsp), which has proved invaluable in improving simulator performance.

HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a distributed computing framework for scalable Big Data processing. HSRA currently supports single-end and paired-end read alignments from FASTQ/FASTA datasets. Moreover, our tool uses the Hadoop Sequence Parser (HSP) library (link above) to efficiently read the input datasets stored on the Hadoop Distributed File System (HDFS), being able to process datasets compressed with Gzip and BZip2 codecs.

An extension package to Pentaho Data Integration, providing plug-ins. Steps/job entries can be downloaded independently and each comes with source code in the .zip file. All are licensed as LGPL or GPL.

An IDE for people interested in Machine Vision/Image Processing. Written in Java, using JAI. It allows users to view image data and also provides a drag and drop environment that users can create/execute graphs of JAI operators.