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...After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data. MOIRAI has a graphical interface allowing wet-lab researchers to create, modify and run analysis workflows. Embedded within the workflows are graphical quality control indicators allowing users assess data quality and to quickly spot potential problems. MOIRAI package comes with three main workflows allowing users to map, annotate and perform an expression analysis over multiple samples.

TeleScope is the efficient intensive-load XML data stream broker, replicator and simple event processing platform (SEP) written in C for the Fedora 17-18, Slackware 13-14, Red Hat Enterprise Linux 6 (RHEL-6) Linux distributions. The platform is intended to be operated upon the single number/word values and is not meant to be deployed for full-text XML stream analysis. TeleScope has internal query language with a set of standard logical operators that allows to construct relatively complex...

LuaXLL is a lightweight Lua interpreter built into a Excel XLL. The XLL has extensions built into it which allow new Excel functions to be defined in a Lua script and exposed to the main application with the XLL marshalling data across the environments. Its primary use is for rapid modelling and development. And it could also serve as an interface to more advanced models built in C. It has built-in support for ODBC databases (via LuaSQL) and some generic modeling functions (added as I need them). The entire XLL is currently less than 600KB.

A MATLAB-based software package for microbiological research designed to detect and outline bacterial cells in microscopy images and to analyze fluorescence signal inside them.

Artist is a portable 2D graphics library. Main features are: drawing primitives, bitmap blitting, alpha blending, zoom and rotation, text rendering and image file loading. It uses hardware acceleration and provides a simple and elegent API.

This is a generalized rack widget written using the Gnome Canvas, which is specifically targeted for scientific operations (including Chemistry/Biology). The main purpose of the widget would to visualize standardized containers such as microtiter plates.

Quake II Weapons Facotry (THE Team fortress for Quake II) meets Quake III Arena WFA. The engine is founded on Q2 GPL code, and uses the WFA media. Visit the main website for more details.