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As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the wiki: http...

Latest Code in GitHub: https://github.com/aquaskyline/MICA-aligner To better utilize MIC-enabled computers for NGS data analysis, we developed a new short-read aligner MICA that is optimized in view of MIC’s limitation and the extra parallelism inside each MIC core. Experiments on aligning 150bp paired-end reads show that MICA using one MIC board is ~4.85 times faster than the CPU-(multi-core)-based BWA-MEM and about the same speed as the GPU-based SOAP3-dp. Furthermore, MICA’s...

JChart2D is a easy to use component for displaying two- dimensional traces in a coordinate system written in Java. It supports real-time (animated) charting, custom trace rendering, Multithreading, viewports, automatic scaling and labels. Former UI controls (right click context menu, file menu) have been ported to the subproject jchart2d-uimenu (https://sourceforge.net/projects/jchart2d-uimenu.jchart2d.p/) for the benefit of having no dependencies to 3rd party libraries.

... of being converted to LGPL. This will gradually take place (on Github) over the next few months (in 2016). JavaFBP is now also on Maven.

PAICE is a rapid bioinformatics pathway visualization tool for KEGG-compatible accessions derived from Illumina Solexa next-gen and Affymetrix datasets. It colors KEGG pathways while appreciating detection-calls and duplicate gene copies.

Is a document viewer based on WemagOnlineDocument for KnowledgeTree DMS, add features to view or edit the document viewing his metadata,buttons to swap metadata and document position (right, left), and Prev/Next to navigate document in folder or search result order (need to be improved). Sourceforge version is outdated, please download last version directly from my website http://kt.patricioleon.cl/software/

MEM Net - Mote EMulator Network. This project will focus on: 1) MEM - Wireless Sensor Node (mote) emulator 2) MEM Net - network of emulated motes So far, the only released package is “visual-sim-slides”. More comming next !

Webbased groupware written in php,mysql. Supports log,events,project management, calendar, todolist, contact management, cvs (file management). Next version includes a rss feed

Ulysses is a next-generation software for the calculation and visualization of electric and magnetic fields as emitted by electric objects like transformer stations, high voltage transmission lines and sub-terrain cables.

The purpose of SNX is to have a modular series of components that report back to a central repository and 'AI' for pattern recognition and anomoly detection. This is to help with IDS systems, and to move to the next generation of security.

Interlogy - next generation knowledge storage and prezentation system. Gives wide functionality for knwoledge evaluation. Interlogy is the same as forum, wiki, chat, socialnetwork, but all together.

dbxWebApp www.dbXwebApp.org PHP open-source Content-Management and Data-Management System with DHTML and WYSIWYG Editor & IDE. Database-DataDictionary for every DB. Next-Generation-CMS&DMS. Please visit www.dbXwebAppp.org for more Informations and Downlo