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A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
VIPS is an image processing suite designed for extremely large images and colorimetry. It consists of a powerful re-usable library and a graphical user interface. http://www.vips.ecs.soton.ac.uk
Parse, analyze and -- most importantly -- use COBOL data definitions. This gives you access to COBOL data from Python programs. Write data analyzers, one-time data conversion utilities and Python programs that are part of COBOL systems. Really.
This is an ETL software which loads data from DBF/XBase files into MySQL. This utility has command line interface, designed to work without user interaction.
A colorized interactive dotplot program designed for pair-wise comparisons of RNA & DNA. The original idea was from the mind of late Prof. William J. Dreyer of Caltech. The idea is to be able to see the "tapestry" of life, which comes alive with color.
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Pypes is a framework which allows users to break complex data processing logic down into a series of smaller less complex tasks. These tasks, referred to as components, can then be connected so that the output of one becomes the input to another.
Spire is a print stream converter/manipulator. It can transform print streams from Metacode to Postscript, Postscript to Metacode. PCL support will be added soon. Spire is also capable of sorting documents (think postal sortation) and added barcodes.
PMML-compliant scoring engine and analytic toolkit
Augustus development has moved to google code. The new project page is augustus.googlecode.com. New releases of the project are not currently being released to sourceforge.
Augustus is designed for statistical and data mining models and produces and consumes models with 10,000s of segments.
Versions of Augustus support PMML 3, 4.0.1, and 4.1.
WebBabel is a python web application using OpenBabel to convert files
from one format to another.
It runs under Windows, Mac or Linux on your desktop, workstation or laptop.
It uses the Jmol (or Marvin) viewer to show the structures being converted.
A lightweight, browsing-based, 100% Python, federated data integration framework. Users may create custom schemas for disparate sources, query and expand results across sources to find related data; for use in fields such as bioinformatics and datamining
StormForce is a free open source program written in Python/PyGame for the Boltek LD-250/StormTracker. StormForce works in FreeBSD, Linux, and Microsoft Windows.
PyMaTi is a simple and easy to use GUI for numerical and scientific computing in Python. It surrounds well know packages NumPy and Matplotlib and provides possibility to immediately play with numerical python from intuitive user interface.
The Model Interaction Environment for Neuroscience provides tools for development, searching, editing, execution, and visualization of biophysical models, abstract mathematical models, and experimental protocols used in neuroscience research.