Search Results for "fastq-join"
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Showing 24 open source projects for "fastq-join"
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FunSQL.jl
Julia library for compositional construction of SQL queries
FunSQL is a Julia library for the compositional construction of SQL queries. Julia programmers sometimes need to interrogate data with the Structured Query Language (SQL). But SQL is notoriously hard to write in a modular fashion. FunSQL exposes full expressive power of SQL with compositional semantics. FunSQL allows you to build queries incrementally from small independent fragments. This approach is particularly useful for building applications that programmatically construct SQL... -
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DataFrames.jl
In-memory tabular data in Julia
DataFrames.jl is a powerful Julia package for working with in-memory tabular data. It provides a familiar, flexible, and efficient interface for handling datasets, making it easy to load, manipulate, join, and analyze structured data. With syntax inspired by data frames in R and pandas in Python, it offers intuitive tools while taking advantage of Julia’s speed and type system. The package is actively maintained by the JuliaData community, with contributions from over 200 developers worldwide. It is widely used for data science, research, and production applications, supported by extensive documentation, tutorials, and a free Julia Academy course. ... -
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OrientDB
DBMS supporting graph, document, full-text and geospatial models
OrientDB is an Open Source Multi-Model NoSQL DBMS with the support of Native Graphs, Documents, Full-Text search, Reactivity, Geo-Spatial and Object Oriented concepts. It's written in Java and it's amazingly fast. No expensive run-time JOINs, connections are managed as persistent pointers between records. You can traverse thousands of records in no time. Supports schema-less, schema-full and schema-mixed modes. Has a strong security profiling system based on user, roles and predicate... -
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Foxglove Studio
Robotics visualization and debugging
...Upload recordings to your private data lake for easy storage, searching, and analysis. Stream recorded data directly into Foxglove Studio to get insights into your robots' behavior. We're long-time fans and beneficiaries of open source software. Join our community on Github and Slack to contribute bug reports, feature requests, or pull requests. -
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Teem
Tools to process and visualize scientific data and images
...Includes N-dimensional image I/O and processing, volume rendering, diffusion tensor processing, and more. Latest code via git clone http://git.code.sf.net/p/teem/teem.git . Join us at https://discord.gg/xBBqZGXkF7 -
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OSHMI - Open Substation HMI
SCADA HMI for substations, IoT and automation applications
...This project combines existing open source projects and tools to create a very capable, mobile and cloud-friendly HMI system that can rival proprietary software. This approach makes it possible to join forces of each project (Chromium, SVG/HTML5, PHP, Lua, SQLite, Inkscape, Lib61850, OpenDNP3, Nginx, Vega, PostgreSQL, Grafana,…) to achieve a great set of open, evergreen, modular and customizable tools for building great HMIs for automation projects. This is not a toy project! It's been actually used in dozens of substations up to 230kV level and also in control centers with configurations up to 70.000 tags. ... -
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PANDORA
Revolutionizing Biomedical Research with Advanced Machine Learning
...In order to run a test instance of PANDORA, users will first need to prepare their local environment by downloading, installing, and configuring Docker. genular is a community behind SIMON an open-source Machine Learning KnowledgeDiscovery software, built by a vibrant community of people just like you! Join us and make SIMON even cooler! Exploratory analysis of machine learning results with the help of many different visualization techniques will give you instant insights into models and data. -
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Javis
Julia Animations and Visualizations
...Javis makes generating simple animations a breeze! Want to learn more? Check out our documentation for tutorials, our contributing guidelines, and the mission of Javis.jl. We have a live Zulip stream that you can join to discuss Javis with other Javis users. -
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DataStation Community Edition
App to easily query, script, and visualize data from every database
...It allows you to easily build graphs and tables with data pulled from SQL databases, logging databases, metrics databases, HTTP servers, and all kinds of text and binary files. Need to join or munge data? Write embedded scripts as needed in languages like Python, JavaScript, R or SQL. All in one application. Build reports with graphs, charts and tables. Script against data. Cross-platform: Windows, macOS, and Linux. Easily fetch your data, wherever it is: 18 SQL and non-SQL databases, files, HTTP server. Over 20 supported databases out of the box including: PostgreSQL, MySQL, MariaDB, SQLite, SQL Server, Oracle, ClickHouse, Influx 1 (InfluxQL), Influx 2 (Flux), Prometheus, Elasticsearch, AWS Athena, Google BigQuery, Snowflake, Cassandra, Scylla, TimescaleDB, YugabyteDB, CockroachDB, CrateDB, QuestDB, and Airtable. -
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JuliaDB.jl
Parallel analytical database in pure Julia
JuliaDB is a package for working with large persistent data set. JuliaDB provides distributed table and array datastructures with convenient functions to load data from CSV. JuliaDB is Julia all the way down. This means queries can be composed with Julia code that may use a vast ecosystem of packages. -
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Query.jl
Query almost anything in julia
Query is a package for querying julia data sources. It can filter, project, join and group data from any iterable data source, including all the sources supported in IterableTables.jl. One can for example query any of the following data sources: any array, DataFrames, DataStreams (including CSV, Feather, SQLite, ODBC), DataTables, IndexedTables, TimeSeries, Temporal, TypedTables and DifferentialEquations (any DESolution). -
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JAETL - Just Another ETL Tool
Just Another ETL Tool
JAETL - Just Another ETL tool is a tiny and fast ETL tool to develop data warehouse. JAETL allows to Extract data from ARFF (Weka), CSV, and SQL, Transform the data with join, replace missing values, remove duplicates, mapping filtering, variable selection, and Load the data into SQL server and export to CSV and ARFF. -
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MarDRe
MapReduce-based tool to remove duplicate DNA reads
MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems. Instead, MarDRe takes advantage of the MapReduce programming model to significantly improve ParDRe performance on distributed systems, especially on cloud-based infrastructures. ... -
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apache spark data pipeline osDQ
osDQ dedicated to create apache spark based data pipeline using JSON
This is an offshoot project of open source data quality (osDQ) project https://sourceforge.net/projects/dataquality/ This sub project will create apache spark based data pipeline where JSON based metadata (file) will be used to run data processing , data pipeline , data quality and data preparation and data modeling features for big data. This uses java API of apache spark. It can run in local mode also. Get json example at https://github.com/arrahtech/osdq-spark How to... -
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HSRA
Hadoop spliced read aligner for RNA-seq data
...This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a distributed computing framework for scalable Big Data processing. HSRA currently supports single-end and paired-end read alignments from FASTQ/FASTA datasets. Moreover, our tool uses the Hadoop Sequence Parser (HSP) library (link above) to efficiently read the input datasets stored on the Hadoop Distributed File System (HDFS), being able to process datasets compressed with Gzip and BZip2 codecs. -
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X10
Performance and Productivity at Scale
...This model introduces two key concepts -- places and asynchronous tasks -- and a few mechanisms for coordination. With these, APGAS can express both regular and irregular parallelism, message-passing-style and active-message-style computations, fork-join and bulk-synchronous parallelism. Both its modern, type-safe sequential core and simple programming model for concurrency and distribution contribute to making X10 a high-productivity language in the HPC and Big Data spaces. User productivity is further enhanced by providing tools such as an Eclipse-based IDE (X10DT). Implementations of X10 are available for a wide variety of hardware and software platforms ranging from laptops, to commodity clusters, to supercomputers. -
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An integrated pipeline for forensic analysis from SNP panel data. 1. SNP caller takes a FASTQ file and reference SNP panel as input and generates SNP calls. 2. Kinship analysis 3. Ancestry prediction 4. Data quality check 5. Replicate analysis 6. Mixture analysis module available by request
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BAIO
Bioinformatics Artificial Intelligence Order
A smart interface of AI that will interrogate and complete your bioinformatics data analysis for you. Download and start your instance of BAIO to join the network of great bioinformatics Minds. -
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di-history-join-plugin
Plugin for Pentaho Data Integration used to supply a method to join tw
This plugin supply a method to join two tables using the date-from and date-to history. It use the two dates that indicate the life of the record and join using a query (like the database join plugin) to resolve the record's story of the two entities. -
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A tool to support data-analysis on a Oracle-DB. In Greek mythology, Metis (Μῆτις) was of the Titan generation ... The Stoic commentators allegorized Metis as the embodiment of "wisdom" or "wise counsel" ... (from Wikipadia)
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Toolsverse ETL Framework
Open source Extract Transform Load engine written in Java
ETL Framework is a standalone Extract Transform Load engine written in Java. It includes executables for all major platforms and can be easily integrated into other applications. Key Features: * embeddable, open source and free * fast and scalable * uses target database features to do transformations and loads * manual and automatic data mapping * data streaming * bulk data loads * data quality features using SQL, JavaScript? and regex * data transformations Requirements *... -
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...Free plug-ins for SAP Business One (SAP B1), that I developed privately. Since upgrading to 8.8.1, I have to convert them and in doing so, I am open sourcing them. I am hoping others will join with their own stable add-ons :-)
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Tata is a Qt project aiming at developing a data analysis program for scientific use. It contains wave form display and other data analysis functions, you can easily add your own code to fulfill your specific need. Welcome to join us!
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Dark Beginnings is a MUD server made in C++ using Qt4.3 and MySQL, it is aiming at having a higher number of stock deployment options by use of scripted modules. Anyone is free to join and help out.
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