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Showing 2 open source projects for "bowtie"

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1

jChIP

Graphical environment for exploratory ChIPSeq data analysis

...In addition it computes statistics of the number of loci/positions containing specified amount of tags. jChIP is able to load data in several common formats (SAM, BAM, WIG, BED, Bowtie) and download loci definitions directly from the Ensembl database. http://www.biomedcentral.com/1756-0500/7/676

Downloads: 0 This Week

Last Update: 2015-05-04
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2

MR_test

...Nonetheless there is currently no systematic evaluation of existing computational tools used for whole genome or whole exome sequencing data analysis. We developed a Metamorphic Testing tool that tests three widely used short-read alignment programs (BWA, Bowtie and Bowtie2) in order to systematically evaluate their performance.

Downloads: 0 This Week

Last Update: 2014-05-15
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