Showing 313 open source projects for "sql command line"

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  • 1
    MICA-aligner

    MICA-aligner

    Next-generation sequencing short reads aligner based on Intel® MIC

    Latest Code in GitHub: https://github.com/aquaskyline/MICA-aligner To better utilize MIC-enabled computers for NGS data analysis, we developed a new short-read aligner MICA that is optimized in view of MIC’s limitation and the extra parallelism inside each MIC core. Experiments on aligning 150bp paired-end reads show that MICA using one MIC board is ~4.85 times faster than the CPU-(multi-core)-based BWA-MEM and about the same speed as the GPU-based SOAP3-dp. Furthermore, MICA’s...
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  • 2
    gMol

    gMol

    gMol molecular graphics

    We've moved to https://github.com/tjod/gMol/wiki gMol is an interactive visualization system used to display and manipulate 3-dimensional models of scientific data, such as molecular structures and surfaces. It contains both OpenGL and web browser widgets that enable flexible user interfaces.
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  • 3

    PRADA

    PRADA : Pipeline for RNA-Sequencing Data Analysis

    Massively parallel sequencing of cDNA reverse transcribed from RNA (RNASeq) provides an accurate estimate of the quantity and composition of mRNAs. To characterize the transcriptome through the analysis of RNA-seq data, we developed PRADA. PRADA focuses on the processing and analysis of gene expression estimates, supervised and unsupervised gene fusion identification, and supervised intragenic deletion identification. PRADA currently supports 7 modules to process and identify...
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  • 4
    KETL(tm) is a production ready ETL platform. The engine is built upon an open, multi-threaded, XML-based architecture. KETL's is designed to assist in the development and deployment of data integration efforts which require ETL and scheduling
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  • 5

    flow visualization toolbox

    matlab 2D image processing GUI toolbox for flow visualization

    A general flow visualization Matlab toolbox for image processing of some common planar/surface visualization techniques from PLIF (Planar laser induce fluorescence) for tracer distribution, BOS (background oriented Schlieren) for density, TSLC (Temperature sensitive liquid crystal) for thermal and PSP (Pressure sensitive paint) pressure distribution measurement. This work is part of author's PhD study, under Dr S. Zhong @ the University of Manchester's supervision, guidance and support. Both GUI and command line interface are provided for newbie and advanced user. Image can be processed into contour image, matlab mat and tecplot data. This toolbox can be conveniently extended for 2D image processing in other disciplines, for example, surface stress measurement, inferred thermograph, PIV. See developer guide for HOWTO. * example project.mat and calib.mat use abs path will not work for you directly. pl. rebuild yours according to my youtube tutorial
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  • 6

    Data Migrator for Oracle

    Migrate/Copy your data between Oracle database and 13 major DBs.

    Command line data Copy/Migration tool for Oracle. Supports Oracle 7.3, Oracle 8i, Oracle 9i, Oracle 10G, Oracle 11G and 13 major databases. 1. Exadata 2. Sybase ASE 3. Informix Innovator C 4. Sybase SQL Anywhere 5. DB2 UDB 6. CSV 7. SQLServer 8. MariaDB 9. Sybase IQ 10. PostgreSQL 11. MySQL 12. Informix IDS 13. TimesTen
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  • 7

    Data Migration Tools for RDBMS

    DataMigrator for 14 major databases

    Touch and go Windows command line data migration tool for 14 databases: 1. Sybase ASE 2. Informix Innovator C 3. Sybase SQL Anywhere 4. DB2 UDB 5. SQLServer 6. MariaDB 7. Sybase IQ 8. PostgreSQL 9. MySQL 10. Informix IDS 11. TimesTen 12. Oracle 13. SQL Lite 14. Exadata
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  • 8
    TeleScope

    TeleScope

    XML Data Stream Broker/Replicator

    TeleScope is the efficient intensive-load XML data stream broker, replicator and simple event processing platform (SEP) written in C for the Fedora 17-18, Slackware 13-14, Red Hat Enterprise Linux 6 (RHEL-6) Linux distributions. The platform is intended to be operated upon the single number/word values and is not meant to be deployed for full-text XML stream analysis. TeleScope has internal query language with a set of standard logical operators that allows to construct relatively complex...
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  • 9

    DataMule

    Extract-Copy-Load (ECL) tool for 14 databases.

    Extract, Copy and Load operations for: 1. Sybase ASE 2. Informix Innovator C 3. Sybase SQL Anywhere 4. DB2 UDB 5. SQLServer 6. MariaDB 7. Sybase IQ 8. PostgreSQL 9. MySQL 10. Informix IDS 11. TimesTen 12. Oracle 13. SQL Lite 14. Exadata Total 224 data copy vectors. CSV -> DB. DB->DB DB->CSV
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  • 10

    Larch: Data Analysis for X-ray Spectra

    Data Processing and Analysis for X-ray Spectroscopy and More

    Larch is a scientific data processing language that is designed to be easy to use for novices and complete enough for advanced data processing and analysis. Larch provides a wide range of functionality for dealing with arrays of scientific data, and basic tools to make it easy to use and organize complex data. Larch has been primarily developed for dealing with x-ray spectroscopic and scattering data, especially the kind of data collected at modern synchrotrons and x-ray sources. ...
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  • 11
    A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).
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  • 12

    SQLServer ->SQLServer Data Migrator

    Copy data between your SQLServer instances

    Ad-hoc data replication for SQLServer 2005,2008,2010 and 2012. Touch-and-go design requires you to provide just login info, query file with your SQL and target table name.
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  • 13
    Noble Ape Simulation
    Simulates a biologically diverse tropical island, and the ape inhabitants cognitive processes. For MacOS X, iPad, Windows and Linux. Features a non-polygonal graphics engine and a command-line version
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  • 14
    SFrame is a C++ framework built around the ROOT libraries for analysing particle physics data. It gives a very high performance for processing data, by allowing the user to run his/her code on a distributed farm of machines.
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  • 15

    DataCopy For SQLServer

    Data Copy tool for SQL Server and Oracle

    Migrate your data from SQLServer to Oracle without creating single dump file. Input is a SQLServer query file defining dataset you want to copy to Oracle. Target table has to exist for copy to go through. Turbo mode offers 5x copy performance improvement.
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  • 16

    Data Spooler for SQLServer #SaveUkraine

    Extracts table or query data from SQL Server 2005, 2008, 2012

    #SaveUkraine #StopRussia #FreeUkraine #StopPutin #CrimeaIsUkraine #UnitedForUkraine #RussiaInvadedUkraine Spools/extracts/dump table or query data from SQL Server 2015, 2008,2012. Serial spool creates single dump file. Turbo mode offers 5x spool performance improvement. Sharded turbo more creates multiple files.
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  • 17
    giServer

    giServer

    giServer the easy to use and extensible batch and integration server

    The giServer is an easy-to-use integration server for process automation and event-driven or scheduled execution of batch jobs. Instead of using complex XML configuration files an elaborate GUI for batch job management is included. Some possible usage scenarios are: - Automatic processing of incoming data files - Big Data applications - Process automation - Data Mining/Aggregation applications - Automatic Reporting - Processing and analysis of database records
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  • 18
    The aoetools are programs for users of the ATA over Ethernet (AoE) network storage protocol, a simple protocol for using storage over an ethernet LAN. The vblade program (storage target) exports a block device using AoE.
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    Downloads: 20 This Week
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  • 19

    slycat

    Web-based data science analysis and visualization platform.

    This is Slycat - a web-based data science analysis and visualization platform, created at Sandia National Laboratories. The goal of the Slycat project is to develop processes, tools and techniques to support data science, particularly analysis of large, high-dimensional data.
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  • 20

    Data Spooler For Oracle #SaveUkraine

    Simplified turbo spooler for Oracle.

    #SaveUkraine #StopRussia #FreeUkraine #StopPutin #CrimeaIsUkraine #UnitedForUkraine #RussiaInvadedUkraine Exports/Spools scalar data on disk for a given Oracle table. Turbo mode spools 5x faster.
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  • 21
    KeplerDB

    KeplerDB

    Timeseries databases management system

    KeplerDB is a temporal database to store time/value entries where the type of value could be integer, float/double, boolean and string. KeplerDB is dedicated to be scalable and to create clusters of server allowing the user to analyse and store massing amount of data to monitor systems like computers, clusters, building and captors or financial systems like markets and accounts. The user can use KeplerDB to make data analysis on enormous amount of data (statistics and modelling).
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  • 22

    PDF*Merger for Windows

    Merge/concatenate PDF files into one PDF file

    Merge your PDF files for upload to reporting engine or other needs. Command line, win32 Written in Python. Compiled with PyInstaller.
    Downloads: 1 This Week
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  • 23
    Graphical Grammar Studio

    Graphical Grammar Studio

    An user friendly grammar tool for natural language processing tasks

    Full documentation with tutorials is included in the download package. Graphical Grammar Studio is a tool for applying grammars which behave as words acceptors/consumers and annotators. GGS grammars can be used to find and annotate sequences of words which respect certain conditions, in a given input. Its purpose is for creating NLP tools like phrase chunkers, named entity finders, pronoun co-reference solvers etc. A grammar is represented by a state machine which can be visualized, edited...
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  • 24

    WebChemViewer

    A simple program for sharing molecular structures with associated data

    Sharing lists of molecular structures with associated chemical properties is a common task in computer-aided drug design and medicinal chemistry. WebChem Viewer is a simple, free, open-source program that generates HTML-formatted output that can be viewed in any modern web browser, on any operating system (including mobile), without requiring the installation of additional software. The output can also be easily incorporated into existing web pages. WebChem Viewer is released under the...
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  • 25
    Grid3D Toolbox

    Grid3D Toolbox

    3D grid toolbox for analysis of molecular simulations

    "Grid3D Toolbox" is a set of command line tools for visualization and analysis of the results of molecular simulations based on 3-dimensional density maps (grids). Currently, the tools only work with the simulation trajectories generated by the GROMACS simulation package (http://www.gromacs.org/). The generated density maps are saved in the Grid3D native .g3d format and can be visualized using a third party data visualization software.
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