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ProteinArchitect facilitates the visual exploration of the architecture of proteins, including conserved domains, secondary structure elements and structurally flexible regions, e.g. in the context of the analysis of protein superfamilies.
The Graphical Display and Analysis Tool (GDAT) is a flexible and extensible data graphing program suitable for engineering applications. It can display and measure waveforms (e.g., rise time), and it can be extended through a plugin architecture.
Template database is a novel relational database that provides schema freedom. The current implementation is on top of PostgreSQL. It has interesting properties that make it suitable for dataanalysis / annotation / modeling.
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BIRBU (BIological Relationship BUilder) is a Java tool for microarray gene expression dataanalysis. BIRBU identifies biologically significant relationship between genes using microarray data and prior knowledge on relationships between genes.
** IMPORTANT NOTICE ** 10 Feb 2006 Code is being moved to the SMI subversion repository (http://smi-protege.stanford.edu/svn/owl/trunk/) Project will continue to be open source. ProtegeOWL info at: http://protege.stanford.edu/overview/protege-owl.html
A python tool for dataanalysis of FLEXPART transport modeling.
This software is being created to work with FLEXPART and other atmospheric transport model ouput. FLEXPART is a Lagrangian particle dispersion model written by Andreas Stohl. It is in active development at NILU and by Sabine Eckhardt, John Burkhart and numerous other research groups worldwide. For more information on FLEXPART visit the homepage
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Linguistics tool, mainly for discourse analysis. Trans-Scribe will provide users with an interface for transcribing .wav audio speech files in any language and creating documents that display, publish, or export the waveform along with transcriptions.
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We are still in the developing progress, the idea is to write a mathematical vector analysis program, with an easy GUI. Deutsch: Das Projekt ist noch in der Entwicklung. Es soll ein Vektor-Analyseprogramm werden, zum analysieren von Ebenen, Geraden etc..