Search Results for "python tools" - Page 4
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Showing 107 open source projects for "python tools"
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ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW....
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular... -
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Data Migration Tools for RDBMS
DataMigrator for 14 major databases
Touch and go Windows command line data migration tool for 14 databases: 1. Sybase ASE 2. Informix Innovator C 3. Sybase SQL Anywhere 4. DB2 UDB 5. SQLServer 6. MariaDB 7. Sybase IQ 8. PostgreSQL 9. MySQL 10. Informix IDS 11. TimesTen 12. Oracle 13. SQL Lite 14. Exadata -
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Larch: Data Analysis for X-ray Spectra
Data Processing and Analysis for X-ray Spectroscopy and More
Larch is a scientific data processing language that is designed to be easy to use for novices and complete enough for advanced data processing and analysis. Larch provides a wide range of functionality for dealing with arrays of scientific data, and basic tools to make it easy to use and organize complex data. Larch has been primarily developed for dealing with x-ray spectroscopic and scattering data, especially the kind of data collected at modern synchrotrons and x-ray sources. Larch is written in Python and relies heavily on the standard tools for scientific computing with Python (numpy, scipy, matplotlib, and h5py). -
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Pathomx
Workflow-based data analysis built on IPython
Pathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended and can now be used for any scientific and non-scientific data analysis. -
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slycat
Web-based data science analysis and visualization platform.
This is Slycat - a web-based data science analysis and visualization platform, created at Sandia National Laboratories. The goal of the Slycat project is to develop processes, tools and techniques to support data science, particularly analysis of large, high-dimensional data. -
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MoDAVE aims at providing data analysis and visualization extensions to Mosaic datasets, including cubed sphere data, to the Climate Data Analysis Tools (CDATA) in particular.
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Pumilio is a web-based sound analysis and archive system for almost any kind of sound file with tools to see the spectrogram of the sound, select regions for further analysis and insertion in a database, filtering, and many other manipulations.
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Our goal is to find out useful and funny ways for expanding the possibilities of many FOSS by integrating them with other FOSS and proprietary systems. You'll find here many open source plugins and extensions useful to put those FOSS hermits together.
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Portable Linux
Portable Ubuntu Linux for Scientific Computing
Released August 22, 2013 Lubuntu Blends: Biochemistry 13.04 (Raring) v5.44 Linux Kernel Image 3.8.0-29 Lubuntu Blends are pre-installed Wubi disk image remixes of Ubuntu and Debian Science meta packages, A custom boot loader allows installations to be copied and automatically booted from most external or USB flash drives. Once up and running, use earlier Lubuntu Remix README instructions here until documentation is updated.... -
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Electrophysiology & circular stats tools
Data analysis and circular statistics with OpenElectrophy and R
Set of tools for basic analysis of electrophysiological data. The Python classes show how to call OpenElectrophy functions and save data. The R library applies circular statistics to spike phase data and saves the best von Mises fit and the Rayleigh statistics on the disk. The wavelet coherence analysis is done in R by the package "sowas". -
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PROJECT MOVED: see http://www.vmtk.org for up-to-date information. Libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis in image-based blood vessel modeling.
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NGS data quality evaluation
Python tool to evaluate the quality of high-throughput sequencing data
ngsdataqeval is a Python tool to evaluate the quality of high-throughput sequencing data, used by Next Generation Sequencing. Unlike other tools that analyze raw data, this is designed to evaluate the quality of the processed reads after mapping to a reference genome. The evaluation is performed in a genomic region defined by the user, and it provides some statistics computed from the reads that map to that region (ie. a single gene). -
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Cca-forum unifies the Common Component Architecture tools and tutorial. It includes the CCA specifications, the Ccaffeine framework for HPC, and related tools. These support multilanguage scientific and parallel computing.
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pyastrolib is a python library providing professional astronomers a robust set of tools for astronomical data analysis. This project will provide all the functionality as NASA's IDL Astronomy User's Library in addition to other planned features.
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--UPDATE-- New Version is now integrated in the official PyMOL plugin repository! --UPDATE-- The BNI (Beyond Normal Interaction)- Tools is a plug in for the PyMOL molecular visualization system which adds additional functionalities and presets to the PyMOL GUI and also adds useful extended commands.
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A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
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Data mines the voting record and other actions of Members of the UK Parliament. Extracts information from the parliament website and stores it in a database. Provides tools to analyse the information, producing statistics and tables about the MPs.
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DataSync Suite is an open source platform for integrating tools like Zimbra, SugarCRM, and Drupal. The tool is focused on a single sign-on, application data integration, and fast, flexible deployment.
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MBDyn_sim_suite is a collection of free pre&post-processing tools and simulation models for the open-source multi-body analysis software MBDyn forming a general purpose simulation environment for structural dynamics with an emphasis on wind turbines.
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The Scientific Visualization Artist Tools (SVAT) include converters from the Visualization Toolkit (VTK) to RenderMan Interface Bytestream (RIB) (ASCII and binary files supported), Blender to RenderMan, compilable RenderMan shaders and other utilities.
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The Model Interaction Environment for Neuroscience provides tools for development, searching, editing, execution, and visualization of biophysical models, abstract mathematical models, and experimental protocols used in neuroscience research.
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PyPlotSuite aims to provide immediate, easy-to-use, GUI tools to display, analyze and create publication-quality 2D plots of 1D data series, images, 2D arrays. This project is based on (and would not exist without) pygtk, matplotlib and numpy.