Search Results for "data structure project in java" - Page 3
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Showing 313 open source projects for "data structure project in java"
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GMOL
A tool for 3D genome structure visualization
GMOL is an application designed to visualize genome structure in 3D. It allows users to view the genome structure at multiple scales, including: global, chromosome, loci, fiber, nucleosome, and nucleotide. This software was built upon the pre-existing Jmol package by Prof. Cheng's group. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. ... -
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MarDRe
MapReduce-based tool to remove duplicate DNA reads
MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems. Instead, MarDRe takes advantage of the MapReduce programming model to significantly improve ParDRe performance on distributed systems, especially on cloud-based infrastructures. Written in pure Java to maximize cross-platform compatibility, MarDRe is built upon the open-source Apache Hadoop project, the most popular distributed computing framework for Big Data processing. -
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ProMoVis
A Tool for Control Structure Selection in Interconnected Processes
ProMoVis is a software environment which can visualize a process system and analyze this interconnected system using the control structure selection methods. The tool s implemented as either a standalone software for industrial use or as a research version which can run within Matlab, both released under the Apache Open Source license. ProMoVis is not limited to the control structure selection problem as additional analysis methods can be added easily. For the re-use of existing models a... -
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IDA ClassInformer PlugIn
IDA Pro plug-in to fix/extract/view RTTI information
* April 2025: This project has moved to GitHub! The latest version can now be found at: https://github.com/kweatherman/IDA_ClassInformer_PlugIn. An IDA Pro Windows object RTTI vftable finder, fixer, and lister plug-in. Places structure defs, names, labels, and comments to make more sense of class and structure vftables ("Virtual Function Table"). Lists found RTTI structures and C++ classes in a window for browsing. Mentioned in Chris Eagle's: "The IDA Pro book":... -
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As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the wiki: http://sourceforge.net/p/adamajava/wiki/Home/
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A shell for using the methods of Contextual Logic to do qualitative data analysis, mathematical research on the theory underlying Conceptual Knowledge Processing, or learning Formal Concept Analysis. It uses the framework provided by the Tockit project..
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This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
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Seldon Server
Machine learning platform and recommendation engine on Kubernetes
Seldon Server is a machine learning platform and recommendation engine built on Kubernetes. Seldon reduces time-to-value so models can get to work faster. Scale with confidence and minimize risk through interpretable results and transparent model performance. Seldon Core focuses purely on deploying a wide range of ML models on Kubernetes, allowing complex runtime serving graphs to be managed in production. Seldon Core is a progression of the goals of the Seldon-Server project but also a more... -
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Bias is a cross-platform versatile information management application / Organizer
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Lightweight Model Database
An easy to use and lightweight CAD model data management tool.
This little Tool was developed in order to tidy up the CAD models and other documents in my 3D printing project folder. Full description and Manual, see: http://encorecad.de/index.php/3d-druck/lightweight-model-database-en -
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CrNiCKL
CrNiCKL (chronicle) is a Java database for time series
CrNiCKL (pronounced "chronicle") is a data manager written in Java handling large sets of heterogeneous time series. A simple schema system allows to confiture value types and time domains. CrNiCKL runs on top of SQL or NoSQL databases. Drivers for JDBC and MongoDB are available. -
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EntOpt Layout
Relative entropy optimization network layout plugin
The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks, Bioinformatics 35(21):4490-4492 https://academic.oup.com/bioinformatics/article/35/21/4490/5475596 Our detailed Tutorial on the use of the plugin: https://suopte.com/entopt_2_1_tutorial_20200518.pdf A video about the version 2.1: http://suopte.com/entopt_2_1_tutorial_video.mp4 Don't hesitate to send any questions, comments or bug reports also to agg.bence {at} med.semmelweis-univ.hu. -
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DataCleaner
Data quality analysis, profiling, cleansing, duplicate detection +more
DataCleaner is a data quality analysis application and a solution platform for DQ solutions. It's core is a strong data profiling engine, which is extensible and thereby adds data cleansing, transformations, enrichment, deduplication, matching and merging. Website: http://datacleaner.github.io -
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MOIRAI
Simple Scientific Workflow System for CAGE Analysis
Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data.... -
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Maui
Maui is the Maltcms User Interface
Maui is the Maltcms User Interface, a rich client application for Chromatography-Mass Spectrometry and related research areas. -
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GeOxygene aims at providing an open framework which implements OGC/ISO specifications for the development and deployment of geographic (GIS) applications. It is a open source contribution of the COGIT lab. at the IGN (the French National Mapping Agency).
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FiMaLib
a financial math library and financial market data database
This project should combine a financial mathematics library with an underlying financial market database (and a set of other tools), which could be used by financial institutions for their financial market data needs as well as by students for research works. -
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Marid
Free data acquisition and data visualization cross-platform software
Marid is a cross-platform data acquisition and visualization software intended to build complex and hierarchical data acquisition systems. The base concepts of its architecture include: * Graphical deploy configuration builders * Powerful Groovy scripting language * Embedded database ( H2 , HSQLDB) to store data * Cross-platform design (write once, run anywhere) * Embedded GUI-configurable binary/ascii device protocol parser/generator * Deploy manager to deploy firmwares to remote... -
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UltimateRecyclerView
A RecyclerView(advanced and flexible version of ListView in Android)
UltimateRecyclerView is a RecyclerView(advanced and flexible version of ListView) with pulling to refresh, loading more, swiping to dismiss, draging and drop, animations ,sticky header,show or hide toolbar and FAB when scrolling and many other features.You can use it just like RecyclerView. Notice that UltimateRecyclerView is a project under development. Swipe to refresh(using android.support.v4.widget.SwipeRefreshLayout). Many kinds of animations. Swipe to dismiss. Parallax or normal head... -
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RSS Atom Feed Analytics With MapReduce
This is a data analytics project for RSS feeds using hadoop MapReduce
This project accepts the output of jatomrss project as the input. It applies the MR logic on the same to perform the analytics -
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Ship Lock Scheduling
Scheduling lockages at ship locks with several parallel lock chambers
This Java software includes algorithms of combinatorical optimization for the NP-hard offline ship lock scheduling problem. Solutions and performed computations can be displayed graphically. Besides, there is a framework for generating test instances and running these in parallel, as well as R/JGR code for statistical evaluation. Some tools for estimating the quality of calculated solutions will be further improved. Initially the software was developed within a project of TU Berlin regarding... -
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Visualization of Protein-Ligand Graphs
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/ -
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The objective of this project is to provide an innovative tool for visualization of multiples genomes. Written in Java, it presents a simple and intuitive user interface to view and manipulate the relationships between groups of genes.
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Waterloo
Java-based scientific graphics
Java-based scientific graphics with support for Java, Groovy, MATLAB, Python, the R statistical environment, Scala and SciLab. -
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Crygr
Compare and visualize charge densities from various file formats.
This project is a small program using Qt for calculation and visualization of electron charge densities in crystals and molecules. It can create a 2D plane of charge densities or create a 1D representation of the charge densities along a given line, in both cases it can also export the graphical representations to various image formats. The program can import various file formats such as space 3D grids of charge density values, created in a quantum chemistry programs Gaussian, Crystal and...
