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Tools for integration and analysis of heterogeneous immunological data
An extensive description of this system is published in the Journal of Translational Medicine (http://www.translational-medicine.com/).
In brief, the system consists of two main web applications, a data integration app and a data exploration app. The data integration app is a fully custom Java "Web 2.0" product called Sherpa. Sherpa uses Seam, a platform integrating Asynchronous JavaScript and XML (AJAX), JavaServer Faces (JSF), the Java Persistence API (JPA), and Enterprise Java Beans...
Uma Ferramenta Computacional para Análise e Recuperação de Patentes
O Pytente é uma solução avançada para automatizar o processo de coleta, armazenamento e tratamento de dados bibliográficos de patentes. A ferramenta foi projetada para simplificar a coleta de grandes volumes de dados em repositórios de acesso aberto. O Pytente garante o armazenamento estruturado das informações, além da validação e eliminação de registros duplicados. Dentre as diversas funcionalidades disponibilizadas pela ferramenta, destacam-se a extração personalizada de subconjuntos de...
ZENBU is a data integration, data processing, and visualization web system based around three main web interfaces : an expression data enhanced genome browser interface, a secured user system for data upload and secured data sharing, and a data explorer interface to find and manipulate data across the many supported experimental data types and to find shared user configurations
ZENBU is built as a web2.0 client/server application with javascript web clients and c++ server infrastructure.
Open Information Integration Tool Suite (Open II) is used by analysts and programmers to accelerate data integration and harmonization across organizations. OpenII has a neutral schema repository for browsing and comparing all sorts of data models.
OpenII is built as a Rich Client Platform Application on top of Eclipse 3.x. Developers need to download Eclipse, install the RCP support, the Fatjar plugin and the Delta Pack in one of the 3.x flavors.
Release Notes
Release Date: Jan...
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The Bio2RDF project aims to transforms silos of life sciencedata into a globally distributed network of linked data for biological knowledge discovery. Bio2RDF creates and provides machine understandable descriptions of biological entities using the RDF/RDFS/OWL Semantic Web languages. Using both syntactic and semantic data integration techniques, Bio2RDF seamlessly integrates diverse biological data and enables powerful new SPARQL-based services across its globally distributed knowledge bases.
Framework for text mining, data integration and data analysis. Keywords: ontology and graph alignment, relation mining, warehouse, semantic database integration, bioinformatics, systems biology, microarray, Java.
A lightweight, browsing-based, 100% Python, federated data integration framework. Users may create custom schemas for disparate sources, query and expand results across sources to find related data; for use in fields such as bioinformatics and datamining
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The Hanalyzer is a tool designed to help biologists explain results observed in genome-scale experiments and to generate new hypotheses. It combines information extraction, semantic data integration, reasoning, and visualization.
The Stem Cell Artificial Neural network project entails the analysis and integration of genomics data for extracting the stemness signature of several tissues by training a multiclass single-layer linear artificial neural network.
The BioDataServer is a database integration system. It implements a mediator-wrapper architecture and offers a SQL interface. The data integration is based on user defined intergrated schema and adapter that wrap any kind of data source.