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A file format for exchanging computational models in systems biology
The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more.
nexml is an xml format that represents phylogenetic data (trees, character sequence alignments, sets of OTUs, substitution models). The format is inspired by the commonly used flat-file NEXUS format, but more robust and easier to process.
Warren-CMS is a content management system with developer-provided file type handlers, built-in link and grouping management, and an XML interface that makes writing proprietary clients easy for developers who wish to do so.