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The metabolomics standards initiative (msi) will develop a Core Information for Metabolomics Reporting (CIMR) recommendation and a more formal and semantically defined corresponding ontology (msi-ontology).
SETTLE (Seer Extract/Transform/Translate/Load Engine) This utility uses XML configuration files to define the flow of information from Data Sources to varioius Data Targets. XML is likewise used to define transformation rules in between. Transformation l
CodeSnippet is a set of Eclipse plug-ins to convert Ant, Java, Properties, CSS, DTD, HTML, and XML source code (complete files or snippets) to HTML with syntax highlighting.
Xcarecrows4XML completes Eclipse to handle the tasks required by an XML workflow. It offers: a graphical XML, XML Schema and XML stylesheets editor; a graphical XML tree comparator; a built-in checker against XML Schemas; an XSL transformations tool kit.
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BeanReader is a tool that uses annotations on Java classes to extract objects from XML documents. The annotations indicate (using XPaths) where in the document the object's properties are represented.
XUI is a Java and XML RIA platform for building smart app's. Swing, AWT and other widget sets can be used on a range of hardware. XUI's modular framework can help many aspects of application development. NetBeans and Eclipse are available.
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htmlCharset is a file conversion tool, useful for replacing HTML entities by the actual characters that they represent, or vice versa. As a spin-off, it can also be used as a general charset converter for arbitrary text files.
BITXml is an open xml based protocol for Machine to Machine communications. BITXml is both language and "transport" agnostic and covers all the requirements of a generic M2M telemetry & control application. For more info www.bitxml.org
jumbles (Java Unified Metadata Basic Library for Extracting and Storing) is a library that enables the extraction and storing of multimedia metadata. Currently wraps "jaudiotagger" (MP3 ID3 tags) and "metadata extractor" (EXIF, et al.).
Simple Mutated API for XML. A prototype of a new java based stream parser based on sax with an improved interface to improve ease of use and performance. See Web page for details.
XHTML Doclet is a standards-compliant alternative to the Javadoc standard HTML doclet. It revises the document structure to exclude outdated tags and inline styles, creates valid XHTML markup, and provides better hooks for more flexible CSS manipulation.
JZipLib is a very simple interface for zipping a file. It's as easy as calling a method named createZip (File input, File zipfile). Please see the Wiki for documentation.
JAVA tool for creating html image maps. It's possible to load a picture and create rectangles, circles and polygons. Additionally, content for href, alt and title can be set.
CHMPane is a Java program to process compiled html (.chm) files. It has a stream based API for accessing CHM file content and provides a GUI to navigate and view the content.
NewfEl is an XML parsing utility that uses the Java reflection API to assign parsing tasks to classes derived from the XML tag names. It is particularly useful for developing configuration file parsers.