Showing 1394 open source projects for "gnu/linux"

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  • 1

    picard

    A set of tools for working with high-throughput sequencing data

    A set of tools (in Java) for working with next generation sequencing data in the SAM/BAM format. Note that development has moved to GitHub at https://github.com/broadinstitute/picard and support is available on the GATK forum at http://gatkforums.broadinstitute.org/categories/ask-the-team
    Downloads: 9 This Week
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  • 2
    xmlsh
    "xmlsh" is derived from the design and goals the unix shell and core commands but with XML expressions and documents added as core features to the shell. xmlsh can be used as a drop-in replacement for scripting xml transformations instead of sh.
    Downloads: 0 This Week
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  • 3
    Regain is a Java search engine based on Jakarta Lucene. It provides indexing and searching files for plenty of formats (HTML,XML,doc(x),xls(x),ppt(x),oo,PDF,RTF,mp3,mp4,Java). A TagLibrary eases integrating search results in your JSP based web page.
    Downloads: 8 This Week
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  • 4
    JUICE is a cross-platform utility for editing Aleph One map files. It can’t replace a dedicated editor like Forge, but it is capable of editing several aspects of map files, most of which are geared toward fixing and tweaking network maps.
    Downloads: 1 This Week
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  • 5

    CSV Tools

    Tool for splitting and changing encoding or delimiters in CSV files.

    Simple tool for converting CSV file. You can easily change file encoding, escaping or separator character. You can split the file into more smaller files as well.
    Downloads: 1 This Week
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  • 6
    JImageConverter

    JImageConverter

    massive image format converter

    Light application in Java to convert images massively from a format to other. Default formats are JPG, JPEG, BMP, WBMP, PNG and GIF.
    Downloads: 0 This Week
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  • 7
    !!! Moved to GitHub: https://github.com/brabenetz/settings4j !!! The Programmer want the settings for Key 'xyz', and should not care about where the Settings comes from (Classpath/FileSystem, JNDI Context, DB, etc....) !!! Moved to GitHub: https://github.com/brabenetz/settings4j !!!
    Downloads: 0 This Week
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  • 8

    Joda - Time

    Project moved to GitHub

    Joda-Time provides a library of classes to replace the Java JDK Date and Time classes including formatting. It is based around the ISO8601 datetime standard, but also provides full support for other calendar systems, such as Gregorian and Buddhist. Project moved to GitHub: https://github.com/JodaOrg/joda-time
    Downloads: 0 This Week
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  • 9
    Darkfall Emulator

    Darkfall Emulator

    Develop an emulated Darkfall Online Server.

    This project is the development of an open source fully emulated Darkfall Online Server and reverse engineering the proprietary game engine that DFO uses, the SF3D engine as well as its source code.
    Downloads: 0 This Week
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  • 10

    JavaJson

    JavaJson is a Java implementation of JavaScript Object Notation (JSON)

    JavaJson is a Java implementation of JavaScript Object Notation (JSON) This project has been moved to github and is now hosted at: https://github.com/mdeanda/javajson
    Downloads: 0 This Week
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  • 11

    RDFConvert

    commandline syntax convertor for RDF

    RDFConvert is a simple command-line tool for converting RDF file betweeen different syntax formats. It is based on the OpenRDF Rio parser toolkit, and currently supports RDF/XML, Trig, Trix, Turtle, N3, N-Triples, RDF/JSON, JSON-LD, Sesame Binary RDF and N-Quads.
    Downloads: 1 This Week
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  • 12
    Our aim is to enable Web applications to consume linked data from the Web. With SQUIN (Semantic Web Query Interface) we will provide a Web data query service as an addition to the LAMP technology stack. This service executes queries over the whole We
    Downloads: 0 This Week
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  • 13
    FREEML

    FREEML

    Your own fantasy script to xml

    This is a parser and writer to convert free script to xml. The script is defined in a package where each class describes one element. There are certainly other projects of this type. But this project is created to keep this transformation as simple as possible.
    Downloads: 0 This Week
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  • 14
    The National Library of New Zealand's Metadata Extraction Tool automatically extracts preservation-related metadata from digital files, then output that metadata in XML formats. It can be used through a graphical user interface or command-line interface. Please take the latest code from 'https://github.com/DIA-NZ/Metadata-Extraction-Tool.git'. The code on source forge will not be updated henceforth as it is moved to github.
    Downloads: 3 This Week
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  • 15
    FM-Classic provides an easy way to get data from Java servlets into Web pages, and helps you keep graphic design separate from application logic. FM-Classic is a continuation of the FreeMarker 1.x code base.
    Downloads: 0 This Week
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  • 16

    iwnbtjl

    A Java NBT library with freedom.

    The Ian Watters Named Binary Tag Java Library (IWNBTJL for short) is a Java library that allows work with the Named Binary Tag format created by Notch with any project of your's (please note, no one owns NBT). Written off of the JNBT library (http://jnbt.sourceforge.net/), this contains usage improvements, however is not too different from the original library.
    Downloads: 0 This Week
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  • 17

    ontocomp

    OntoComP is a Protégé 4 plug-in for completing OWL ontologies

    OntoComP is a Protégé 4 plug-in for completing OWL ontologies. It enables the user to check whether an OWL ontology contains "all relevant information" about the application domain, and extends the ontology appropriately if this is not the case. It achieves this by asking the user questions of the form "are instances of classes C1 and C2 also instances of class C3?". If the user confirms such a question, then a new axiom of the application domain that does not follow from the ontology has...
    Downloads: 0 This Week
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  • 18
    The goal of this project is to provide a ContentProvider plugin to IMAP Mailsystems for iQser GIN Semantic Middleware (www.iqser.com).
    Downloads: 0 This Week
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  • 19

    XML Content Provider

    Plugin to connect XML data sources to the GIN Server

    The GIN Server is a semantic middleware for efficient "bottom-up" data integration and automized semantic analysis for dynamically linked data. The XML Content Provider is a configurable plugin for the GIN Server to integrate any XML data source with a simple structure.
    Downloads: 0 This Week
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  • 20

    RDF Content Provider for iQser GIN

    Plugin to connect RDF sources with the GIN Server

    GIN Server is a semantic middleware for easy data integration and automized analysis. The extendable architecture allows to plugin in data sources, analytics and event handling. This RDF Content Provider enables access to Semantic Web Content as an RDF file or SPAEQL endpoint.
    Downloads: 0 This Week
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  • 21
    PHDL

    PHDL

    An HDL alternative to PCB graphical schematic capture tools.

    PHDL is an HDL that functions as an alternative to mainstream graphical schematic capture tools. The language is compiled into a pcb netlist which can then be imported into a layout tool. We are currently on version 2.1 of the tool. We have created an eclipse plugin version of the tool as well as a standalone command-line based version. Both function identically and output a netlist that can be imported into a pcb layout tool. VHDL revolutionized how FPGA designs and digital logic...
    Downloads: 0 This Week
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  • 22

    Freie Bibel

    Digitalization and Reproduction of the Bible as Free Software

    The repository has moved to GitHub! Das Repository ist nach GitHub umgezogen! https://github.com/freie-bibel The bible resources of this project are in German language and the software is in English. This repository contains only the text-based files, see the website of the project http://www.freie-bibel.de for the binary files. For more information, see the detailed project description http://www.freie-bibel.de/official/projekt/bibeldigitalisierung.html. If you're interested in...
    Downloads: 0 This Week
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  • 23
    An easy to extend Java Object formatter that currently supports conversion between JSON and Java. Because of its core architecture, other formats can easily be added (XML is already being worked on). Please read "Why JOFfree" in news area.
    Downloads: 0 This Week
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  • 24
    JavaFeedParserCommon

    JavaFeedParserCommon

    Provides common classes, which can be used to parse news feeds

    "JavaFeedParserCommon" is a Java-library, which provides common classes and interfaces, which can be used by projects, which should allow to parse XML-based news feeds, such like RSS- or Atom-feeds.
    Downloads: 0 This Week
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  • 25
    An open-source Java-based XCCDF reference implementation.
    Downloads: 0 This Week
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