Showing 62 open source projects for "using"

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  • 1

    An introduction to Data Analysis in R

    A guide for learning the basic tools on data anaylisis with R

    An Introduction to Data Analysis in R [Book] A guide for learning the basic tools on data anaylisis: process, visualize and learn from your data using R programming. This repository holds the necessary data sets for the book "An introduction to Data Analysis in R", to be published by Springer series Use R!. The book can be purchased in XXX. The book is meant as an introductory guide to manipulate data sets in the Big Data paradigm. One of the main goals of this book is to take the analyst from the very first moment when she/he contacts with data to the final conclusion and presentation of results of analysis. ...
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  • 2
    RadiationHelper

    RadiationHelper

    Alpha, Beta, Gamma measurements and Nuclide exposure

    RadiationHelper is a data analysis tool for : 1. gross alpha and beta radiation measurement and detector calibration using experimental data (counts acquired by alpha-beta devices). 2. gamma spectroscopy measurements and detector calibration using experimental data (spectra acquired by acquisition software such as Assayer, Gamma Vision, Maestro) 3. gross alpha,beta, gamma detector efficiencies and gamma peak efficiency can be theoretical computed using Monte-Carlo simulation technique for radiation transport (based on EGSnrc toolkit) 4.dose assessment in human body exposed to radiations from nuclides in several common scenarios such as air exposure, water submersion, ground surface, internal ingestion or inhalation. 5. quick dosimetry and shielding computations. ...
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  • 3
    TXM-Wizard
    Toolbox for handling X-ray transmission image data collected using the Xradia TXM system. We are constantly updating the code to implement other file formats as well - suggestions are welcome. Main articles: -) TXM-Wizard: a program for advanced data collection and evaluation in full-field transmission X-ray microscopy, Journal of Synchrotron Radiation, 19, 281-287. (2012) http://scripts.iucr.org/cgi-bin/paper_yard?
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    Downloads: 39 This Week
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  • 4
    A shell for using the methods of Contextual Logic to do qualitative data analysis, mathematical research on the theory underlying Conceptual Knowledge Processing, or learning Formal Concept Analysis. It uses the framework provided by the Tockit project..
    Downloads: 0 This Week
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  • 5
    ProteoWizard
    ...The ProteoWizard Library is a set of software libraries and tools for rapid development of proteomics data analysis software. The libraries are cross-platform and built from the ground up using modern C++ techniques.
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    Downloads: 7 This Week
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  • 6
    DSTK - DataScience ToolKit

    DSTK - DataScience ToolKit

    DSTK - DataScience ToolKit for All of Us

    ...Of course you may specify JASP for advanced data editing and RapidMiner for advanced prediction modeling. DSTK is written in C#, Java and Python to interface with R, NLTK, and Weka. It can be expanded with plugins using R Scripts. We have also created plugins for more statistical functions, and Big Data Analytics with Microsoft Azure HDInsights (Spark Server) with Livy. License: R, RStudio, NLTK, SciPy, SKLearn, MatPlotLib, Weka, ... each has their own licenses.
    Downloads: 0 This Week
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  • 7
    PMM-Lab

    PMM-Lab

    Predictive Microbial Modeling plug-in for KNIME

    ...The framework can easily be extended to other model types, e.g. growth/no-growth boundary models. PMM-Lab has been initiated and provided by the Federal Institute for Risk Assessment - BfR (Berlin, Germany). The software is in Beta status. Before using the software you have to read and accept the license and disclaimer (https://sourceforge.net/p/pmmlab/wiki/Disclaimer/). If you do not agree, do not use this software.
    Downloads: 1 This Week
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  • 8
    CANStream

    CANStream

    An applicaton for CAN bus coms development, testing and validation

    CANStream is a .NET application intended to be used for CAN (Controller Area Network) bus communication development, testing and validation. CANStream allows to extensively test any system using CAN communication by sending and receiving CAN frames. Thanks to its powerful built-in mathematical expression evaluator, CANStream can also behave as a real control system feeding back the test device or commanding a third party device with context sensible data. Extended data logging and data analysis features of CANStream provide a comprehensive solution for testing and results analysis CANStream extensively uses the PCAN-Basic API developed by PEAK System for the PCAN-USB adapter You will therefore need to have PCAN-USB adapter and at least one free USB port available to make a complete use of CANStream. ...
    Downloads: 0 This Week
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  • 9

    MS2Browser

    LC-MS/MS data browser designed for siderophore analysis

    ...Some of the functionality and use of MS2Browser is described as part as an open-access book chapter: http://www.intechopen.com/books/applications-from-engineering-with-matlab-concepts/small-molecule-lc-ms-ms-fragmentation-data-analysis-and-application-to-siderophore-identification A siderophore structural database assembled for this project can be found alongside the MS2Browser software (.cfw format to be used with ChemBioFinder(TM) ). NOTE: The program is written for personal use to assist siderophore analysis using high-resolution LC-MS/MS data. Please contact me if you have any questions about its use, bugs, etc.
    Downloads: 0 This Week
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  • 10
    ChEnMTD

    ChEnMTD

    Calculate the number of theoretical trays with McCabe-Thiele method

    Use the McCabe-Thiele method to calculate the number of theoretical trays in a distillation column operated under the conditions specified. It has tools for data analysis to obtain empirical or semi-empirical equilibrium models. You can even use cubic splines. This project uses icons of "Open Icon Library" https://sourceforge.net/projects/openiconlibrary/
    Downloads: 0 This Week
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  • 11
    Perl OBD-II Logger

    Perl OBD-II Logger

    A Perl program for logging OBD-II PID data

    ...The program supports scantools that are based on the ELM Electronics ELM327 or OBD Solutions STN1110 programmed microcontrollers. It has been tested with scantools using legacy RS-232 serial, serial over USB, and Bluetooth hardware interfaces. Perl OBD-II Logger even runs on the popular Raspberry Pi computer!
    Downloads: 2 This Week
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  • 12

    Lab Processes

    Rediscover the Simplicity http://www.atgclabs.com/

    ...Genetic and physiological data can be entered either manually or automatically when automated genotyping and analytical phenotypic assays are used. The Lab Processes application is web-based and completely customizable, with Animal Studies it is very simple to create, change and distribute data flows using an iterative approach. Animal Studies puts all the information right at your fingertips. If you are experiencing problems using Lab Processes then please report your problem to support@atgclabs.com
    Downloads: 0 This Week
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  • 13
    qtFit
    qtFit is a program used to fit ASCII data. The graphical user interface (GUI) of qtFit is designed using QT software. The regression is done using CERN’s MINUIT routine and plotting is perfomed with the QCustomPlot library. This document is a manual of the qtFit program, and includes instructions about installation, features description, and how-to-use examples.
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  • 14

    chipexo

    model based analysis of ChIP-exo data

    ...MACExo has the following four steps: 1) sequencing data normalization and bias correction; 2) signal consolidation and noise reduction; 3) single nucleotide resolution border detection using Chebyshev Inequality; and 4) border matching using Gale-Shapley’s stable matching algorithm. When applied to yeast Reb1 and human CTCF ChIP-exo data, MACE is able to define TFBSs with higher sensitivity, specificity and spatial resolution, as evidenced by multiple criteria, such as motif enrichment, sequence conservation, nucleosome positioning, and open chromatin states.
    Downloads: 1 This Week
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  • 15

    SCaVis

    Scientific Computation and Visualization Environment

    ...SCaVis can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations. Linear, non-linear and symbolic regression are also available. Elements of symbolic computations using Octave/Matlab scripting are supported. The project was migrated to DataMelt.
    Downloads: 3 This Week
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  • 16
    EyePro v3.0 (ergo)

    EyePro v3.0 (ergo)

    Award winning eye health monitoring and Work Stress reliever

    What is EyePro? EyePro is a handy PC application that regularly reminds you to take “Short Breaks for your Eyes” with many exciting, customizable and Innovative features. It is an innovative tool done under the guidance of eminent Eye Doctors Who is Eye Pro for? Everyone who spends more than a 2 hours per day looking at a display. But especially People who spend ot of time in-front of PC, Employees with Computer related job environment, Students, Computer Professionals, will...
    Downloads: 4 This Week
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  • 17

    ThermV

    Comprehensive thermal analysis software package

    ThermV thermal analysis software package aims to provide the most sophisticated automatic analysis of thermal analysis data (TG/DTG, DTA and DSC). It offers new algorithm for concurrent peak deconvolution at different heating rates and provides full kinetic analysis of these data, including isoconversional methods for Ea, determination of reaction model and full kinetic triplet, Avrami coefficients, and dimensionality of crystal growth for reactions in the solid state. The project is...
    Downloads: 32 This Week
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  • 18

    TeachingDemos

    Bioinformatics related demos and tutorials using the R programming lan

    Bioinformatics related demos and tutorials using the R programming language for large biological data. Licence: Creative Commons Attribution-NonCommercial 4.0 International License
    Downloads: 3 This Week
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  • 19
    Grid3D Toolbox

    Grid3D Toolbox

    3D grid toolbox for analysis of molecular simulations

    ...Currently, the tools only work with the simulation trajectories generated by the GROMACS simulation package (http://www.gromacs.org/). The generated density maps are saved in the Grid3D native .g3d format and can be visualized using a third party data visualization software. A converter from the .g3d format to .vti, an XML based format of the VTK library is provided with the "Grid3D Toolbox", so that the generated density maps can be visualized using the ParaView data analysis and visualization software (http://www.paraview.org). For more details read the upcoming publication in Faraday Discussions: FD169: Density based visualization for molecular simulation.
    Downloads: 0 This Week
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  • 20
    neural network designer

    neural network designer

    a dbms for neural nets. Chatbots, DTrees, random forests, n-grams,...

    ...It is probably best compared to a database management system, but for neural networks instead of relational data. As such, the library is optimized for handling any type of data-size by using advanced streaming and caching algorithms. With the designer, you are able to create different types of decision trees, random forests, n-grams, pattern-matchers, conversational agents and all sorts of AI related algorithms. You can combine statistical approaches as well as pattern matchers or others. Do natural language processing, image or data analysis & interpretation,...
    Downloads: 0 This Week
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  • 21
    Census2
    Census is a comprehensive cross-platform project manager and integration hub for NONMEM, the gold standard tool for model-based pharmacometric data analysis.
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  • 22

    mendelFix

    Correction of SNP Mendelian errors in trio data

    ...The program takes 12-recoded PLINK PED and MAP files as input, and calculates a series of summary statistics for Mendelian errors, sets as missing offspring genotypes that present Mendelian inconsistencies, and implements a simplistic procedure to infer missing genotypes using parent information. The program can be easily incorporated in any pipeline for family-based SNP data analysis, and is distributed as free software under the GNU General Public License. Utsunomiya YT, Alonso RV, Carmo AS, Campagnari F, Visintin J, Garcia JF (2013). mendelFix: a Perl script for checking Mendelian errors in high density SNP data of trio designs. arXiv:1306.2243. ...
    Downloads: 0 This Week
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  • 23
    CoDaPack
    Compositional data analysis, following the approach introduced by John Aitchison, is not straightforward to use with standard statistical packages. CoDaPack provides a software capable of using the Aitchison methodology.
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  • 24

    HadStat

    HadStat is service on cloud,for data analysis using Hadoop MapReduce.

    HadStat is service on the cloud, allow you to analysis the data on the cloud and return the result in nice graph,this service is free, you can redistribute it and/or modify it under the terms of the GNU General Public License. this service using many technologies , like Hadoop mapreduce, HTML, PHP, Web Service applications, linux server, java, eclipse IDE, with many indicators:Simple moving average (SMA),Exponential moving average (EMA),Smoothed simple moving average (SMMA),Linear weighted moving average (LWMA )on DATA from NYSE daily prices.....
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  • 25

    PL-DAS

    Port Logistics Data Analysis System using Process Mining

    This project is for analyzing operational data from container terminal, applying process mining and port logistics domain knowledge. This project is found by Total Soft Bank, Ltd. and Busan National University, based on ProM framework (http://www.promtools.org) which is also an open source project. This project is sponsored by NIPA (National IT Industry Promotion Agency), Korea.
    Downloads: 0 This Week
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