Search Results for "clustering"

scikit-learn is an open source Python module for machine learning built on NumPy, SciPy and matplotlib. It offers simple and efficient tools for predictive data analysis and is reusable in various contexts.

Dlib is a modern C++ toolkit containing machine learning algorithms and tools for creating complex software in C++ to solve real world problems. It is used in both industry and academia in a wide range of domains including robotics, embedded devices, mobile phones, and large high performance computing environments. Dlib's open source licensing allows you to use it in any application, free of charge. Good unit test coverage, the ratio of unit test lines of code to library lines of code is...

...Perform simple data analysis with clever data visualization. Explore statistical distributions, box plots and scatter plots, or dive deeper with decision trees, hierarchical clustering, heatmaps, MDS and linear projections. Even your multidimensional data can become sensible in 2D, especially with clever attribute ranking and selections. Interactive data exploration for rapid qualitative analysis with clean visualizations. Graphic user interface allows you to focus on exploratory data analysis instead of coding, while clever defaults make fast prototyping of a data analysis workflow extremely easy. ...

hctsa is a Matlab software package for running highly comparative time-series analysis. It extracts thousands of time-series features from a collection of univariate time series and includes a range of tools for visualizing and analyzing the resulting time-series feature matrix.

Elasticsearch is a distributed, RESTful search and analytics engine that lets you store, search and analyze with ease at scale. It lets you perform and combine many types of searches; it scales seamlessly, and offers answers incredibly fast with search results you can rank based on a variety of factors. Elasticsearch can be used for a wide variety of use cases, from maps and metrics to site search and workplace search, and with all data types.

...The package incorporates novel and established methods to provide a flexible framework to perform filtering, quality control, normalization, dimension reduction, clustering, differential expression and a wide-range of plotting. An analytical framework for big-scale single cell data. Transform percentage-based units into a 2d space to evaluate changes in distribution with both magnitude and direction.

Toolbox for handling X-ray transmission image data collected using the Xradia TXM system. We are constantly updating the code to implement other file formats as well - suggestions are welcome. Main articles: -) TXM-Wizard: a program for advanced data collection and evaluation in full-field transmission X-ray microscopy, Journal of Synchrotron Radiation, 19, 281-287. (2012) http://scripts.iucr.org/cgi-bin/paper_yard?hf5192 -) 3D elemental sensitive imaging using transmission X-ray...

...The pipeline uses state-of-the-art tools and can run on various platforms with minimal configuration overhead. The pipeline enables the extraction of knowledge from typical RNA-seq studies by generating interactive principal component analysis (PCA) and hierarchical clustering (HC) plots, performing enrichment analyses against over 90 gene set libraries, and obtaining lists of small molecules that are predicted to either mimic or reverse the observed changes in mRNA expression.

feed4weka is an open library that enriches weka (http://www.cs.waikato.ac.nz/ml/weka/), an open source project for data analysis. It integrates new classification and clustering algorithms, and adds the coclustering and outlier detection frameworks

GEDAS is a software to perform microarray data analysis with friendly user interface and convenient data display. Currently some commonly used data clustering algorithms have been implemented in this software.