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Latest Code in GitHub: https://github.com/aquaskyline/MICA-aligner To better utilize MIC-enabled computers for NGS data analysis, we developed a new short-read aligner MICA that is optimized in view of MIC’s limitation and the extra parallelism inside each MIC core. Experiments on aligning 150bp paired-end reads show that MICA using one MIC board is ~4.85 times faster than the CPU-(multi-core)-based BWA-MEM and about the same speed as the GPU-based SOAP3-dp. Furthermore, MICA’s...

BigPlg allows the collection of the IPv4 Internet routing table which may be viewed by service providers and/or ISP customers to validate IP routing across autonomous systems. Routing updates may also have attributes aliased to become (graph) readable. This function exists to allow the exporting of RIB updates to Splunk, or any such data collector. A beneficial side-effect of collecting BGP routing information is the ability to track BGP updates/events local or remote(upstream). To analyze...

TSDF is data format for reliability degradation data, specifically degradation data from semiconductor devices. It aims to take a potentially large amount of reliability data and put it into a small number of files that are human readable. TSDF does this by separating metadata from raw data. With this separation, it is easy for a user to view or search through a set of TSDF files to get information needed to put the data in context (process, lot and wafer info, device types, failure...