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Data analysis and circular statistics with OpenElectrophy and R
Set of tools for basic analysis of electrophysiological data. The Python classes show how to call OpenElectrophy functions and save data. The R library applies circular statistics to spike phase data and saves the best von Mises fit and the Rayleigh statistics on the disk.
The wavelet coherence analysis is done in R by the package "sowas". Check the module R_coherence to see how we solved that problem.
This packages may be useful for people who start using OpenElectrophy and circular...
ViVA is a desktop package for interactive visualization and visual data analysis. It offers twenty linked visualizations and a library of 250 math functions, which can be used to create new variables or transformations "on-the-fly".
Swift is an open source package for primary data analysis on next-gen sequence data "from images to basecalls". Currently Swift is targeted toward Solexa/Illumina sequencing, but is designed to be platform agnostic.
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While resting-state fMRI is drawing more and more attention, there has not been a software for its data analysis. Based on MATLAB, we developed a package named REST. Currently REST has three main functions: function connectivity, ReHo and ALFF.
PAIDA is pure Python scientific analysis package and supports AIDA (Abstract Interfaces for Data Analysis). PAIDA can create/plot histograms and functions etc. The parameter optimization and its error evaluation are also supported. Can use with Jython!
ROOTSNNS is a set of C++ classes which allows one to use the Stuttgart Neural Network Simulator kernel (ansi-C) within the ROOT, a data analysis package. Multiple ANNs can be built, trained, and tested, while results and ANN performance can be saved.
CCOUNT is a free package for market research data cleaning, manipulation, cross tabulation and data analysis. Similar to, and uses the same syntax as, SPSS-MR Quantum, a well known commercial package for processing market research data.
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