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Counts NGS read alignments against GTF annotations in a multithreaded and scalable fashion.
Benchmark: 8 core 1M annotations for 2Gb sorted reads ~30 seconds compared to ~28 minutes for bedtools multicov.
Files include:
fast_count_multi - reports all counts and RPKM, multithreading support
fast_count_deseq - reports gene counts in deseq compatible format, multithreading support
fast_count - reports all counts with no multithreading support.
ArchC is an open-source architecture description language based on SystemC. Its goal is to provide designers with a tool to evaluate new ideas in processor and ISA design, memory hierarchy, etc. and other aspects of computer architecture research.
This project aims to provide a common and convenient environment for evaluating C and C++ compilers' relative performances on some well-known benchmarks and applications.
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BEMAP (BEnchMarks for Automatic Parallelizer) is a benchmark used to measure performance for an automatic parallelizer.
All OpenCL code benchmarks covered in this project are done step-by-step along with hand-tunning.
Each tuning step executional time are measured in details with a comprehensive user interface and help option.
The exact implementation in native code (C++) is also provided in each project folder for reference.
A novel and effictive GA algorithm to solve optimization problem
...Specifically, the clustering method used in this paper is affinity propagation. The numerical experiments demonstrate that the proposed method performs promisingly for well-known benchmark problems in the term of optimization accuracy.
curl-benchmark is an open-source tool written in C-language that generates multiple and simultaneous HTTP/HTTPS requests and returns data for performance analysis.