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Showing 2 open source projects for "bz2"
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smart_open
Utils for streaming large files (S3, HDFS, gzip, bz2...)
smart_open is a Python library for streaming very large files from local or remote storage through a familiar file-like interface. It acts as an extended replacement for Python's built-in open function. Supported backends include Amazon S3, Google Cloud Storage, Azure Blob Storage, HDFS, WebHDFS, HTTP, HTTPS, SFTP, and local filesystems. Data can be read or written without first downloading an entire remote object to disk. Transparent compression and decompression are supported for multiple... -
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PLEKv2
PLEKv2: predicting lncRNAs and mRNAs
...All you need is RNA sequences (fasta file). Steps: 1. Download PLEK.2.1.tar.gz from * and decompress it. $ tar zvxf PLEK.2.1.tar.gz 2. Compile PLEK2.1 $ cd PLEK2.1 3. decompress Coding_Net_kmer6_orf.h5.bz2 model $ bunzip2 Coding_Net_kmer6_orf.h5.bz2 4. decompress Coding_Net_kmer6_orf_Arabidopsis.h5.bz2 model $ bunzip2 Coding_Net_kmer6_orf_Arabidopsis.h5.bz2 USAGE Python PLEK2.py -i fasta_file -m model(ve: vertebrate , pl: plant) Examples: $ python PLEK2.py -i test.fasta -m ve Aimin Li, Haotian Zhou, Siqi Xiong, Junhuai Li, Saurav Mallik, Rong Fei, Yajun Liu, Hongfang Zhou, Xiaofan Wang, Xinhong Hei, Lei Wang. ...
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