Search Results for "molecular"
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Showing 4 open source projects for "molecular"
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PingPongPro
Find ping-pong signatures like a pro
...A key question in ping-pong cycle research is identification of piRNAs which are amplified through the cycle. PingPongPro is a command-line tool for detecting ping-pong cycle activity in piRNA-Seq data. PingPongPro was developed at the Institute of Molecular Biology gGmbH in Mainz. -
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Bio.B-Gen
Initial system (box) generator for biological molecular simulations
...Then, optionally, "Bio.B-Gen" resolves overlaps between molecules in the system and saves the new molecular configuration. By running "Bio.B-Gen" multiple times for different molecular species and spacial domains quite complex initial systems can be generated. After the system is generated and all the overlaps are resolved an short GROMACS simulation run (10-20 ps) is usually required to ensure proper relaxation of the system. -
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bc2ld is a command line tool to translate molecular database files from BASECOL (obs. of Paris) to LAMDA format (Leiden University). This command line tool has academic use purposes.
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