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JFtpSync is for uploading web content to a server via FTP. It is designed to do FTP uploading only, and do it well, offering recursive uploading of content filtered by file type. It is primarily a command-line tool but there is a Java GUI as well.
Blitz is a generic tool whose purpose is to maintain and execute test cases of arbitrary complexity. Blitz can be used either as a command-line tool or as a full-featured graphical user interface.
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JarBoy is a archive/packaging tool, which helps to manage, create and explore JAR archives. It could be used as command-line tool, java library or classical GUI application.