Bio.B-Gen
Initial system (box) generator for biological molecular simulations
"Bio.B-Gen" is a command line tool to generate initial systems for biological molecular simulations. "Bio.B-Gen" was mainly designed to be used with the GROMACS molecular dynamics simulation package (http://www.gromacs.org). "Bio.B-Gen" depends on the GROMACS topology and force field information (.top and .itp data files) during the generation stage.
"Bio.B-Gen" adds specified number of copies of a molecule to an existing configuration to a specified spacial domain inside the system...