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The SBML ODE Solver is a command-line tool and programming library (ISO/ANSI C) for construction and numerical integration of an ODE system, derived from an SBML based description of a biochemical reaction network.
Development has moved to https://github.com/raim/SBML_odeSolver . Please download the latest version from there!
SplitPDF -SplitPDF.jar- is a ‘command-line driven’ Java-program, it splits a PDF-file by bookmarks into separated PDF’s. The bookmark is used as title for the newly created PDF. Extremely usefull and fast in a batch processing environment.
This is a continuation of the command line tool createtorrent. While useful, it is lacking in some recent features. The new releases of createtorrent hope to bring createtorrent up to date, making it a modern command-line bittorrent creation program.
BBSGen is an improved Blum-Blum-Shub pseudorandom number generator. It consists of a C library (libbbsgen) and command-line tool (bbsgen). BBSGen can be used in applications and command-line as secure, unpredictable and strong PRNG.
File transfers between some old Nokia phones and Linux via BlueTooth
A command line tool like "ftp" for Linux that allows data transfer with (some) Nokia cell phones via Bluetooth. Warning: Based on unrealiable information => May not work with (or even damage!) your phone!
KMLTool (better name wanted) is a command line tool written in java, mainly designed to automate the process of converting kismets .gpsxml/.netxml files into google earth's KML files, with some features i used to miss in other programs for this job.
plsync is a lightweight remote file synchronization software much like rsync, written entirely in Perl. It features a Perl module, a command line tool and a Network daemon. It is aiming at low ressource consumption (RAM, CPU) and maximum portability.
ODic stands for "Options Dictionary" and aims at creating standards for easier command line tool creation. At the moment it is focused on the 'odic' python module including new design patterns for python main functions.
'ucom' is a command line tool for editing the /etc/passwd file in Linux/Unix systems. It's real name is 'commander'. 'ucom' stands for 'user + commander'. Copyright (C): Daniel Steinhauer <pik-9@users.sourceforge.net>
Giveme is a command line tool that converts files of various audio formats to the format of your inclination, converting multiple files at once, taking advantage of the increasing number of users with multicore computers.
Command line tool for searching and combining GPX files. Creates a valid GPX file of the results allowing you to easily focus on specific areas and merge large numbers of tracks into a single file.
This is a simple command line tool to customize CP2103 USB to UART bridge controllers in home-grown hardware. VID, PID, product name string, serial number string, and release version of the device can be changed next to GPIO port modes.
A small command-line tool for converting AtariST images (.neo, .pi1, .pi2, .pi3) to gifs (using gd).
Please note that you may find the project "RECOIL" at SF, which supports far more formats.
A tool that can extract data from the Calibre SQLite database, including a command line tool that generates OPDS catalogs. In everyone's words, it takes the metadata out of Calibre, and generates catalogs for Stanza, Aldiko and web browsers.
Command-line tool to check ADFs (Amiga Disk Files) for errors and viruses.
A binary is included for Windows users; Linux users are advised to compile the application themselves.
Might also compile under plain DOS; but BE WARNED! When you scan files already renamed by the TOSEC standard, consider that file names may become insanely long in no time.
--UPDATE OCTOBER 2014--
This project is currently suspended! I can't currently find the time to fix/update anything with this program...
bc2ld is a command line tool to translate molecular database files from BASECOL (obs. of Paris) to LAMDA format (Leiden University). This command line tool has academic use purposes.
jAstyle is a 100% pure Java port of the GPL’d AStyle (http://astyle.sourceforge.net/). jAstyle is intented to be created as a library and not as a command line tool, so It does not support those options associated to standard output or console.
binreplace is a command line tool to search and replace binary sequences in a file. It can be very powerful when used together with grep and sed. It uses prefix tree internally to search. It's efficient even with millions of search terms.
apt-gui is a graphical front end for the apt package management command line tool. apt-gui was written by Stephen Thorley as a exersize in python tkinter
A little command-line tool and a little php module to change kerberos passwords, even on a Active Directory server, even already expired ones. It runs on Linux, no additional configuration (or access) to the kerberos server is needed.
A Java-based command-line tool for automatically removing old backups selectively. It can be used when you already make daily backups on disk, and want to clean them up while still keeping some of the ones made weeks, months or years ago.
Command line tool to convert BMP images to binary bitmaps and c header files with 8bit page layout instead of line layout (one byte is 8-bit vertical line). Can be used to present data for graphical LCD images in micro controller programming (eg AVR).