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If you manage phylogenetic data, Bio::NEXUS can make your life easier with a library and ready-made tools to manipulate and visualize NEXUS files (see http://www.molevol.org/nexplorer and http://search.cpan.org/dist/Bio-NEXUS/doc/Tutorial.pod).
A small command line tool to process streams of numbers and spit out the running total, bin the results or merge duplicates. Supports arbitrary precision numbers. ocdf is named for the cumulative distribution function in probability.
The SBML ODE Solver is a command-line tool and programming library (ISO/ANSI C) for construction and numerical integration of an ODE system, derived from an SBML based description of a biochemical reaction network.
Development has moved to https://github.com/raim/SBML_odeSolver . Please download the latest version from there!
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BBSGen is an improved Blum-Blum-Shub pseudorandom number generator. It consists of a C library (libbbsgen) and command-line tool (bbsgen). BBSGen can be used in applications and command-line as secure, unpredictable and strong PRNG.
bc2ld is a command line tool to translate molecular database files from BASECOL (obs. of Paris) to LAMDA format (Leiden University). This command line tool has academic use purposes.
This application checks the remaining training time of EVE Skills. It comes as a GNOME applet and as a command-line tool. EVE is a subscription-based MMORPG set in the far future with space combat, travel, research and marketing.
This is a small and fast library and command-line tool for manipulation of logic/boolean-algebra expressions, including proofing and simplification. A front-end using tigcc for Texas Instruments calculators is planned, too.
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A cross-platform, lightweight, command-line tool for synchronizing a source and a target directory. It is easy to use and ideal for non-interactive scripts to synchronize two directories. It incorporates a time window to avoid FAT partitions problems.
The objective is to create a Unix style command line tool, capable of distributing independent operations of a trivially parallel process over each processor in a Symmetric multiprocessing machine in effort to expedite job completion.
"eccvs" is a GUI based version control system (for linux) that keeps track of all the resources of a software project. Here resources mean source code, documentation, etc., This software is based on the existing CVS command line tool.
SymDiff is a little command line tool for symbolic differentiation and expression evaluation. Furthermore, the code can be used for the symbolical implementation of certain mathematical algorithms that require derivatives.
ntrc (Network TRace Converter) is a command-line tool that allows conversion of network packet traces to and from different formats such as TSH, ns-2 TrafficTrace, tcpdump, etc. Written entirely in C, ntrc is particularly efficient with large traces.
A command line tool that allows a semi-automated scientific articles management. It assumes an existence of a directory of a specific format in the file system. The tool interprets the data stored in the directory (called a repository), extend it via the usage of some automatic tools such as pdftotext, and search the text as well as some metadata.