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The SBML ODE Solver is a command-line tool and programming library (ISO/ANSI C) for construction and numerical integration of an ODE system, derived from an SBML based description of a biochemical reaction network.
Development has moved to https://github.com/raim/SBML_odeSolver . Please download the latest version from there!
Fluxor is a python command-line tool that takes a Metabolic network specified in the Systems Biology Markup Language (SBML) and performs Flux Balance Analysis (FBA) using the Gnu Linear Programming Kit (GLPK) and SWIG.