Search Results for "general morphological analysis"
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Showing 16 open source projects for "general morphological analysis"
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PDF4QT
Open source PDF editor
PDF4QT is open source PDF editor based on Qt framework. It contains a C++ library, applications for viewing/editing PDF documents, and a command line tool. PDF4QT is an open-source PDF editor for Windows/Linux. It is a modern solution for viewing/editing/rendering PDF documents, for users and developers alike. For developers, there is a C++ library and a command line tool for use in scripts. For users, there are four applications offering many features. The project is hosted on Github and... -
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Common Resource Grep - crgrep
Common Resource Grep
CRGREP searches for matching text in databases, various document formats, archives and other difficult to access resources. A command line tool for name and content text matching in database tables, plain files, MS Office documents, PDF, archives, MP3 audio, image meta-data, scanned documents, maven dependencies and web resources. CRGREP will search resources within resources of any arbitrary combination or depth, so text within a document within a zip archive, and so on. Here you... -
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MS-Helios
MS-Helios: A Circos wrapper to visualize multi-omic datasets
Advances in high-resolution mass spectrometry facilitate the identification of hundreds of metabolites, thousands of proteins and their post-translational modifications. This remarkable progress poses a challenge to data analysis and visualization, requiring methods to reduce dimensionality and represent the data in a compact way. To provide a more holistic view, we recently introduced circular proteome maps (CPMs). However, the CPM construction requires prior data transformation and extensive knowledge of the Perl-based tool, Circos. We present MS-Helios, an easy to use command line tool with multiple built-in data processing functions, allowing non-expert users to construct CPMs or in general terms circular plots with a non-genomic basis. ... -
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cocolib / light field suite
CUDA library for continuous optimization and light field analysis
Library for continuous convex optimization in image analysis, together with a command line tool and Matlab interface. Implements several recent algorithms for inverse problems and image segmentation with total variation regularizers and vectorial multilabel transition costs. Also included is a suite for variational light field analysis, which ties into the HCI light field benchmark set and givens reference implementations for a number of our recently published algorithms. *** NOTE: ... -
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ipgrep
Copies IP packets from source to destination PCAP files.
IPGREP is a command line tool to grep IP packets out of PCAP files. It provides basic filter for IP version and IP addresses. It is written in pure C without LIBPCAP, so it should run faster. -
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serlogger
serial logging tool with time stamps and hotkey and automation support
a flexible serial logging tool, runs on GNU/Linux, which can be useful for timing analysis and logging capture of embedded system development. -
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FREJ stands for "Fuzzy Regular Expressions for Java" - it is a command-line tool and library which allow you easily compare strings with patterns disregarding nasty typos and considering several variants (like "Barack Obama", "B.H.Obama" etc.) Project sources are moved to github: https://github.com/RodionGork/FREJ
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Pipeline Builder for NGS tools
Scripting tool for automatize and managing complex NGS analysis
Handling with NGS tool configuration files is a real challenge for modern biologists and biotechnologist. To increase productivity, specificity and enhance the data processing, this tool provides a collection of commands already structured, leading the user in building the correct pipeline for the data he has to analyse. Pipeline Builder is a scripting tool for managing complex NGS analysis pipelines. It helps the user in composing NGS tool commands and composing his own analysis... -
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DR14 T.meter
Compute the DR14 of a given audio file according to the procedure desc
Introduction to DR14 T.meter DR14 T.meter is a free and opens source command line tool for computing the Dynamic Range of your music according to the procedure used in the off-line meter released by the Pleasurize Music Foundation. This tool is very useful to measure how is loud your music and for understanding that a good quality album always has also a good dynamic, and it's also useful for understanding the effects of the so called loudness war. Dr14 t.meter is released under the... -
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BCP
NGS analysis tool
BCP is a command-line tool ideated to analyze NGS data, also offering a wrapper for some common NGS software, including Fastx and Samtools. It is oriented mainly towards targeted resequencing experiments, with a set of functions for general purposes. BCP also includes a function for breast cancer risk estimation, based on the Gail model, using both clinical and genome data. -
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compeo++
compeo++ - Manage Flytec/ Bräuniger Instruments
compeo++ is a light-weight command line tool for GNU/ Linux to interact with flight instruments made by Bräuniger/ Flytec (5020, 5030, 6020, 6030, Competino, Compeo, Competino+, Compeo+). It comes as a portable C++ application with no dependency on any other program (except the GNU/ Linux platform libraries). It aims at being easy to install, easy to run and easy to use. It was written and tested on a two+ years old netbook. It concentrates on supporting the essential instrument... -
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A command line tool that converts a custom xml document (xsav) to a SPSS binary file (sav). It is often easy to generate xml files from software, and by using this tool a SPSS (computer tool for statistical analysis) binary file can easily be generated.
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Diva is a command-line tool for dispersal-vicariance analysis, a simple method for inferring the distributional history of organisms (Ronquist, F. 1997. Systematic Biology 46:193-201).
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A small command line tool to process streams of numbers and spit out the running total, bin the results or merge duplicates. Supports arbitrary precision numbers. ocdf is named for the cumulative distribution function in probability.
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"No comment!" is a command-line tool that generates various comment-related metrics for source code files (e. g. comment density, blank lines per file)
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A command line tool written in C++ that analyzes the source files of a C program to represent the pattern of its system calls in terms of a LALR(1) grammar.
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