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ParaStation is a robust and efficient cluster middleware, consisting of a high-performance communication layer (MPI) and a sophisticated management layer.
Please notice, the public development has moved to github: https://github.com/ParaStation
Hrothgar is a parallel minimizer and Markov Chain Monte Carlo generator by Andisheh Mahdavi of San Francisco State University. It has been used to solve optimization problems in astrophysics (galaxy cluster mass profiles) as well as in experimental particle physics (hadronic tau decays). It is probably adaptable enough to be applied to your merit function if you can write it in C.
Dataflow parallel programming language for clusters
PARUS is a data-flow parallel programming language that allows to build parallel programs for clusters and MPP multiprocessors. The data-flow graph is automatically converted to the C++/MPI source and linked with the libparus runtime library.
Also there are available tools for benchmarking cluster interconnect and visualize it.
PMGR_COLLECTIVE defines a protocol and an API designed to enable MPI jobs to startup in a flexible, scalable manner. This library enables MPI processes to exchange information with each other through a series of collective operations.
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SCR caches checkpoint data in storage on the compute nodes of a Linux cluster to provide a fast, scalable checkpoint / restart capability for MPI codes.
BSPonMPI is an implementation of the BSPlib standard on top of MPI. Both MPI and BSPlib are API's of communication routines meant for parallel computing, but BSPlib is easier to learn and its performance easier to predict.
The Cell Messaging Layer is an extremely fast, MPI-like communication library for clusters of Cell Broadband Engine processors. With it, any Cell synergistic processing element (SPE) can communicate directly with any other SPE, even across a network.
The Parallel Compositing library enables developers to write scalable 3D graphics applications. The library does sort-last compositing, and works on both clusters and SMP machines. The API aims to be the MPI of parallel compositing.
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This project is to develop a versatile benchmark for High Performance Computing (HPC) network environments, currently the Linux-based Beowulf systems. The goal is to examine the TCP/UPD/MPI communications and their impact to system kernel.
MPI Grid Ping is a tool for measuring the latency and bandwidth of a cluster. It runs as a standard MPI cluster job, requiring no extra setup. It will be useful for testing/benchmarking and provide an OSS alternative to Microway's MPI Link-Checker.
...The Science by FlashMob project creates specialized live booting CDs that create a single user supercomputer from a set of handy laptop or desktop machines. Suitable for MPI, CHARM++, and pyMPI parallel programs.
Maui Scheduler is an advanced reservation HPC parallel batch scheduler for use with Linux and BSD clusters. Maui provides a complete scientific scheduling solution, supporting running custom parallel and MPI jobs over Myrinet and ethernet.
MPY is an MPI implementation for Python using MPICH (or any other MPI implementation). MPY also provides helper functions for ease of programming, and a simple plug-in interface.
In many parallel scientific applications the process of grid generation, decomposition, message passing, and performance measurements are of similar stucture. The projects intention is to develop a generic function library that will contain all these.