Search Results for "genome browser django"

Django + shell_plus + Jupyter notebooks made easy. A Jupyter notebook with access to objects from the Django ORM is a powerful tool to introspect data and run ad-hoc queries. Built-in integration with the imported objects from django-extensions shell_plus. Saves the state between sessions so you don't need to remember what you did. Inheritance diagrams on any object, including ORM models.

GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported. Local and internet files can be loaded. This project has moved to GitHub: https://github.com/GenomeView/genomeview

A lightweight and scalable genome browser

iPiG targets the integration of peptide spectrum matches (PSMs) from mass spectrometry (MS) peptide identifications into genomic visualisations provided by genome browser such as the UCSC genome browser (http://genome.ucsc.edu/). iPiG takes PSMs from the MS standard format mzIdentML (*.mzid) or in text format and provides results in genome track formats (BED and GFF3 files), which can be easily imported into genome browsers. For more details about iPiG and it's functionallity, please...

... are queried from existing online tools with BatchPD acting as an intermediate to handle queries and results processing. BatchPD interfaces with the following online bioinformatic resources: * NCBI's GenBank * USCS's Genome browser * ExonPrimer Optional extra SNP checks can be carried out via the web tool: SNPCheck. BatchPD Uses the HtmlCleaner package: http://htmlcleaner.sourceforge.net/

Addons to the Django Framework for mobile clients. MoGo was originally built to handle JP specific issues, but code to handle other locales are welcome as well. Developed and maintained by MARIMORE Inc http://www.marimore.co.jp THIS PROJECT HAS MOVED TO https://github.com/marimore/mobiledjango

CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74

OmicBrowse, developed with Flash and Java, is a highly evaluated genome browser integrating omics knowledge ranging from genomes to phenomes and is especially appropriate for positional-cloning purposes.