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JLine is a java library for reading and editing user input in console applications. It features tab-completion, command history, password masking, customizable keybindings, and pass-through handlers to use to chain to other console applications.
PROJECT REPOSITORY HAS MOVED:
https://github.com/jline
BLOSpectrum tools provide programs to automatically classify proteins according to SCOP database. In order to achieve such a goal, they implements all the required information theory widgets on BLOSpectrum fingerprints.
This is an add-on to stow. If the "make install" didn't work with DESTDIR argument(or use another installer), stow-jail would close the installer command to the sandbox(unionfs+chroot),in this way all go to the "/stow/package_name" directory.
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PBS Job Seer is a program which analyses the state of a PBS/Maui batch system and automatically generates a batch script for MPI jobs which would then be able to start immediately.
RtMidiRouter is a small but powerful command line tool which allows you to route, manipulate and create MIDI messages. For reliable realtime performance RtMidiRouter is based on RtMidi. It is controllable via command line and network (OSC).
Hoea is a python module for hierarchical ontology enrichment analysis, which facilitated GO (Gene Ontology)/KO (KEGG Orthology) enrichment analysis at any desktop.
Simple command line driven Java program to allow you to record arbitrary events in a MySQL database. E.g. when a machine or a person logged on or off. Just call Makam at appropriate points in your login/logout scripts.
The Password tools bundle is one application combining three tools - the Analyser (shows the "strength" of your password, the Generator (generates "strong" passwords) and the Manager (stores passwords securely using Rijndael).
Filecmp is a command-line application that gets two filenames as argument and outputs the comparison between them - e.g. if they are the same or not... it may look irrelevant but sometime it's very useful, specially inside scripts.
Simple but powerful tool for finding java class files on the filesystem, recursively looking into directories and archives. Useful for fixing "class not found" errors and setting the CLASSPATH properly.
Parsers for biological data based on scanner generators like Flex (C), Re2c(C), Jflex (Java) and Ifickle (Tcl). This scanner generators are providing easier maintainance, development and higher speed than hand written scanners. Scanner output is SQL.
CLIG - Command Line Interface Generator Clig is a code generator for several programming languages that allows you easy creation of command line parsers. Including a GUI and Command Line tool.
Klava (Klaim in Java) is a Java package for implementing distributed applications that can exploit mobile code and run over a heterogeneous network environment. Klava is based on the KLAIM (Kernel Language for Agent Interaction and Mobility)
A database system, another, older database system, a compression library, something to do with menus and XML, and whatever I happen to be working on at the time.
HSCP (Hybrid scp) is developing to transmit the large size file at high speed on the long distance and wideband infrastructure. It has achieved the fast transfer by changing the file transfer part of scp into the UDP (using UDT).
A small java application which helps CMake users who want to efficiently organize their source tree with the help of Visual Studio's project editor and CMake's "source_group" command.
Library and command line utility to store binary data in FLAC application metadata blocks, specifically ISO data tracks. Using the data in these blocks it is possible to archive and recreate a bit accurate copy of Enhanced CD/CD Extra discs.
LaCor is intended for physical data analysis in High Energy Physics field.
It was originally designed to aid in lambda hyperon correlations research in the Selex@FNAL experiment, but it should be useful for similar studies.