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MXQuery is a low-footprint implementation of XQuery 1.0, XQuery Update 1.0, XQuery Fulltext 1.0 and XQuery Scripting 1.0 as well as a subset of XQuery 1.1 (windowing, try/catch). It provides extensions to do data stream processing/CEP and SOAP/REST
OSCAR (Open Source Chemistry Analysis Routines) is software for the semantic annotation of chemistry papers. The modules OPSIN (a name to structure converter) and ChemTok (a tokeniser for chemical text) are also available as standalone libraries.
nu-BDI is an extension of the Jason agent interpreter aimed at processing norms using constraints on the agent's instantiated plans. The core agent reasoning cycle now includes a component for processing norms and enforcing norm constraints.
metaDSL provides a framework which eases creation of BNF grammars, parser generators and code generators. Executes as a Maven plugin or from the command line via a lightweight launcher powered by Maven runtime. See also: http://www.metadsl.com/
HATS (Haplotype Amplification in Tumor Sequences) is a tool that calls the amplified alleles, and thus amplified haplotype, in copy number aberration regions in next generation sequencing tumor data. The amplified haplotype may reveal gene variants.
Enrich and query corpora in the TEI-XML vocabulary. CorpusReader manage very large corpora and corpora containing milestone annotation. It provides tools for enriching corpora with output of linguistic parsers, and for extracting quantitative information
A program to calculate and create lists of possible variations (permutations) and selections (combinations) of a given set of elements. Creating the cartesian product of two sets is also possible.
Cougar Squared is a new Java library for machine learning and data mining research, supporting research needs of the community. It is written by researchers for researchers. It extends the WEKA and YALE machine learning frameworks.
[2014-10-31] This project is obsolete, for latest version (6.1.3) see GitHub https://github.com/digital-preservation/droid (source) and http://www.nationalarchives.gov.uk/information-management/manage-information/preserving-digital-records/droid/ (binary)
DROID (Digital Record Object Identification) is an automatic file format identification tool. It is the first in a planned series of tools developed by The National Archives under the umbrella of its PRONOM technical registry...
Volta is a suite of development tools for distributed, hard real-time systems. It includes Cascade, a control flow analysis tool for Java, and Clepsydra, a worst-case execution time analyzer. Also included is a Clepsydra plug-in for jEdit.
GiraffeFTP is a Java based FTP client and server. It includes GUI and command line tools. Good code to see to understand the FTP Protocol and sockets. Also includes a non-standard implementation of SSL sockets.
Xuse manages requirements, use cases & other artefacts that drive software design. Xuse focuses on clear documentation & communication. It defines an XML data model for requirements & use cases with XSLT providing multiple derived views: HTML/SVG/PDF.
Note there is no GUI for entering requirements, however another project (https://sourceforge.net/projects/xguse/) will provide a GUI.
GISpatialNet is a Java-based tool for mapping network data (nodes and edges between them) to spatial coordinates; reformatting network and spatial data together; and calculating spatial network measures.
Install by saving to c:\ drive and typing the following in a command line:
java -jar c:\GISpatialNet-0.9b.jar
CoDec is a Java package for encoding and decoding ASN.1 data structures. CoDec supports the Basic Encoding Rules (BER) as well as the Distinguished Encoding Rules (DER) and provides a library with data structures for many cryptographic standards.
CheckSite is a lightweight application to test the availability of a web site. The application can check the sites through test methods like http return code, md5 of a page,.. CheckSite has a plugin system, possibility to easily develop your own test