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HBAT(Hydrogen Bond Analysis Tool) is a tool to automate the analysis of hydrogen bonds present in a PDB Structure file. HBAT 2 is migrated from PERL to Python.
Latest Documentation: https://hbat.abhishek-tiwari.com/
Web Server Version: http://hbat-web.abhishek-tiwari.com
Latest Github Release: http://github.com/abhishektiwari/hbat
Citation: Tiwari, A., & Panigrahi, S.
Create lipid-bilayer models of arbitrary geometry.
...Amaro, is capable of creating curved membrane models with geometries derived from various possible sources, both experimental and theoretical. We are hopeful that this utility will be a useful tool for the computational-biology community.
Metmask has moved to github http://github.com/hredestig/metmask
Metmask is a tool written in python for managing chemical identifiers for metabolomics experiments. It can incorporate identifiers from local textfiles, several online databases, query PubChem and record all found associations in a local sqlite database.