Search Results for "bwt"
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Showing 4 open source projects for "bwt"
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This is a research project to possible improve compression using LZ77, LZSS or bwt, bwt is used on the bzip2 compression library, the v28 from 04/dec/2022 is the first version to almost beat lzma, indeed it is a tweak of lzma, the decoder for v28 will follow in a few days
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olego
OLego – short or long RNA-seq read mapping to discover exon junction
OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast... -
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Lossless compression program with various algorithms included. Intended for large XML files, but can compress any files. Best results with block compression (BWT+MTF+RLE) on large block over alphabet of words.
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Help implement an industrial strength Burrows-Wheeler transform compressor! Initial release covers block-sort, MTF coding, RLE coding, Huffman coding
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