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DNA sequencing quality values, base calling and trace processing
Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of...
Cheetah is a template engine and code generation tool, written in Python. Web development is its principle use, but Cheetah is very flexible and is also being used to generate C++ game code, Java, sql, form emails and even Python code.
ECB is a file/code browser for Emacs. It can be used to browse any type of file and supports parsing of Java, C, C++, Elisp and some other code like perl, TeX, LaTeX. All browsing windows are within one frame and they are deletion-protected (eg by C-x 1)
xacc.ide is a opensource IDE aimed at mainly .NET development. It has a code editor written in 100% C# code, which is faster than most commercial offerings.
The SAVE-IDE is an integrated development environment for architectural and component-based design of embedded systems. Including a tool chain for analysis, verification and code generation, with focus on safety and real-time.
Vendetta is used to manage and visualize distributed network testbeds. The monitor application visualizes network events in 3D. Vendetta also simplifies common testbed tasks such as pushing code to nodes, initiating experiments, and retreiving logfiles.
UfakPython is a small subset of Python programming language, for small embedded devices, like PICs. UfakPython sources are translated to C by UfakPython Compiler. Small Device C Compiler can then compile the C outputs to the target device's codes.
Custom Architecture Generator Tool is a software based on the Netbeans Platform, the main purpose is to accelerate the embedded system realisation with a high level description: VHDL code,C2VHDL conversion,Quartus project generation,real time application
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As SSLExplorer is now closed source, SSLE-PAM has been ported and integrated to Adito, THE OpenSource fork of SSLExplorer. http://sourceforge.net/projects/adito
PROSE is a system that performs controlled, systematic, and efficient modification of the code of running Java applications without requiring them to be shut down. PROSE is an infrastructure that supports software adaptation by extending apps at runtime.
Java version of Dialogic's SwitchKit API. This API is actually a more "Java Centric" API, with listeners, filters, and a very extensible and modular framework that finally uses JNI to access the native libraries provided by Dialogic.
OpenLubbs - Light Usable Bulletin Board System. An Open Source version of the original text BBS used at Lancaster University, UK. The goal is to improve the code and make it web based. The project is not affiliated or endorsed by Lancaster University.
Tcl/Java consists of two pieces of software. Jacl is an
implementation of a Tcl interpreter written entirely in
Java. Tcl Blend is a Tcl extension that provides access
to Java from inside Tcl. One can prototype Javacode
using Tcl, and much more.
This is an opensource project for the calculation of the mathematical constant Pi. If you are a mathematician or programer please contribute ideas or code for this project. Non professionals are also welcome to contribute.
Chasm-interop is a set of tools that parses C++ and Fortran 90 source files and automatically generates bridging code to provide for seamless language interoperability.
Parapin makes it easy to write code under Linux that controls individual pins on a PC parallel port. This kind of control is very useful for electronics projects that use the parallel port as a generic digital I/O interface (instead of as a printer port)
Columbo reads source code in different languages like COBOL, JCL, CMD and transposes it to graphical views, measures and semantically equivalent texts based on xml. It also investigates into technical bugs.
FSMGenerator is a turn-key solution for FSM (Finite State Machine) automatic generation and integration within user`s software. Please, register to get fast personalized support. Feedbacks, feature requests and bug reports are greatly appriciated.
The tool putting HTML/XHTML documents into the Lotus Notes/Domino R5, R6 or R7 databases. The HTML code is aggregated in defined field of document, including files of the resources. Currently is only supported Polish language.
Java Decompiler, Disassembler and Bytecode debugger. Decompiler supports Java 5 (e.g. generics, for-each loops etc). Debugger allows user to step through each bytecode and view program state. Contains Swing GUI.