Search Results for "clustering" - Page 2
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Showing 240 open source projects for "clustering"
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A Network Datagram Abstraction Interface (NDAI) reference library implementation for IBM's PERCS integrated high speed HFI network.
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QSdpR
Viral Quasispecies Reconstruction software based on QSdpR algorithm
This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population. -
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Postgres-XL is a PostgreSQL-based scale-out cluster that handles both OLTP write intensive workloads as well as OLAP/BI type of workloads thanks to MPP parallelism. Postgres-XL is fully ACID and supports cluster-wide Multi-version Concurrency Control (MVCC) for global consistency and performance. There are commercial companies such as 2ndQuadrant, who provide support and consulting around Postgres-XL. Please visit http://2ndquadrant.com/en/resources/postgres-xl/ for more details.
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Pen Loadbalancer
Pen is a load balancer for udp and tcp based protocols.
This is Pen, a load balancer for udp and tcp based protocols such as dns, http or smtp. It allows several servers to appear as one to the outside and automatically detects servers that are down and distributes clients among the available servers. This gives high availability and scalable performance. -
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Ganglia
Scalable, distributed monitoring system for high-performance computing
Ganglia is a scalable distributed monitoring system for high-performance computing systems such as clusters and Grids. It is based on a hierarchical design targeted at federations of clusters. Supports clusters up to 2000 nodes in size. -
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ParaStation is a robust and efficient cluster middleware, consisting of a high-performance communication layer (MPI) and a sophisticated management layer. Please notice, the public development has moved to github: https://github.com/ParaStation
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UNFS3 [moved to GitHub]
UNFS3 is a user-space NFSv3 server
Development of UNFS3 has moved to GitHub: https://github.com/unfs3/unfs3 UNFS3 is a user-space implementation of the NFSv3 server specification. It provides a unified mountd and nfsd program and so far runs under Linux, NetBSD, and Solaris. -
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The General Hidden Markov Model Library (GHMM) is a C library with additional Python bindings implementing a wide range of types of Hidden Markov Models and algorithms: discrete, continous emissions, basic training, HMM clustering, HMM mixtures.
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rainbow
short reads clustering and local assembly
Efficient tool for clustering and assembling short reads, especially for RAD. -
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Postgres-XC is a write-scalable synchronous multi-master PostgreSQL cluster with the following features. 1) Both read and write scalability. 2) Configured with more than one server. 3) Complete global transaction and visibility management.
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genders
This project has moved to Github: https://github.com/chaos/genders
Genders is a static cluster configuration database used for cluster configuration management. It describes the layout and configuration of the cluster so that tools and scripts can sense the variations of cluster nodes. This project has moved to Github: https://github.com/chaos/genders -
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pg_reorg
Online Table Clustering Tool for PostgreSQL
pg_reorg can re-organize tables on a PostgreSQL database without keeping any locks so that you can retrieve or update rows in tables being reorganized. This module is developed to be a better alternative of CLUSTER and VACUUM FULL. ------- pg_reorg was located in pgfoundry, but has been moved to here temporally. ************************************ 2015.07.03 Now, we are moving to GitHub. http://github.com/ossc-db/pg_reorg ************************************ -
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Gmandel is a fractal image generator for SMP and computer clusters. The graphic frontend is GTK-2 based, although GTK-1.2 is also available. It is intended to explore unknown details of fractals and to provide benchmarks for computer clusters.
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ODIE
Open Design and Integration Environment
The Open Design and Integration Environment is a toolbox of C and TCL code designed to introduce people to programming in a friendly way. It is also designed to be robust enough to novices to develop useful applications. -
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GGI stands for "General Graphics Interface", and it is a project that aims to develop a reliable, stable and fast graphics system that works everywhere. We want to allow any program using GGI to run on any platform requiring at most a recompile.
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XCPU is a suite of tools for cluster management. It includes utilities for job starting, cluster resource management, scalable distribution of boot images as well as creation and control of virtual machines in a cluster environment.
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The aoetools are programs for users of the ATA over Ethernet (AoE) network storage protocol, a simple protocol for using storage over an ethernet LAN. The vblade program (storage target) exports a block device using AoE.
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Hrothgar Parallel LM/MCMC Minimizer
A versatile MCMC and downhill optimization engine
Hrothgar is a parallel minimizer and Markov Chain Monte Carlo generator by Andisheh Mahdavi of San Francisco State University. It has been used to solve optimization problems in astrophysics (galaxy cluster mass profiles) as well as in experimental particle physics (hadronic tau decays). It is probably adaptable enough to be applied to your merit function if you can write it in C. -
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PARUS
Dataflow parallel programming language for clusters
PARUS is a data-flow parallel programming language that allows to build parallel programs for clusters and MPP multiprocessors. The data-flow graph is automatically converted to the C++/MPI source and linked with the libparus runtime library. Also there are available tools for benchmarking cluster interconnect and visualize it. -
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Slackless
Base Slackware Virtual Image
A slightly modified base package Slackware image suitable for VM performance testing. Project Goals: Development of production testing protocols Base Image Base +Apache Base + MySQL Base + node.js Base + AoE Standard Full Slackware Current VM image The goal of the Slackless project is really two-fold. To provide high quality virtual images of the original Slackware operating system suitable for use and testing in virtual environments in an effort to introduce users new to... -
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SrcDS Control
Cross platform administration tool for Source Engine dedicated servers
Cross platform (Windows, Mac, Linux) GUI/command line based administration tool for Valve Source Engine dedicated game servers (srcds). Target audiences: - Individuals who want to set up a dedicated server without having to work with command line tools and config files - Experienced groups managing multiple servers/hosts -
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LaunchMON is a software infrastructure that enables HPC run-time tools to co-locate tool daemons with a parallel job. Its API allows a tool to identify all the remote processes of a job and to scalably launch daemons into the relevant nodes.
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datadensityplot
Creates a data density plot of a 2 dimensional data distribution.
Shows the data density of a 2 dimensional distribution. The problem of showing data density visually is not mathematically well defined, and there are several methods. The program uses sum of reciprocal squared distance to calculate density at each point, with a smear factor to prevent points going to infinity. The smear factor also controls the amount of clustering. There are several options for colour output. Input is via a csv (comma-separated values) file. Now there's a nice GUI...