Search Results for "bwt"

BCM is a high-performance file compressor that utilizes advanced context modeling techniques to achieve a very high compression ratio. All in all, it's like a big brother of the BZIP2.

OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast...

Batman-Seq: Basic Alignment Tool for MAny Nucleotides. A fast BWT-based short reads mapping tools which uses additional statistical method to model error profile of the sequencing experiment.

OpenDark is a free simplification of 'dark'. It's the first open BWT-DC compressor, which has a simple code, high speed and compression ratio. And it's waiting for your ideas! :)

BGZip is a compressor that uses BWT and others techniques to compress archives, sounds and videos with in high compression rates.