Search Results for "statistical" - Page 2
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Showing 119 open source projects for "statistical"
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PlanetPack
Radial-velocity & transits analysis tool for exoplanets
PlanetPack is a software tool developed to facilitate the radial-velocity time-series analysis for the goal of exoplanets detection, characterization, and basic dynamical simulations. The description of the main theoretic concepts, statistical methods and algorithms that PlanetPack implements, is given in the following refereed papers: R.V. Baluev 2013, Astronomy & Computing, V. 2, P. 18 (initial release); R.V. Baluev 2018, Astronomy & Computing, V. 25, P. 221 (update 3.0). The technical manual explaining the details of the practical use is available in the download archive here (see the /doc/ subfolder). -
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TRSL is a C++ library that implements several (statistical) sampling schemes behind an (STL-like) iterator interface. The library may be used e.g. in particle filtering. It is distributed under the Boost SL (BSL is a free-software license).
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PANDA-view
An easy-to-use tool for data visualization and statistical analysis
PANDA-view, an affiliated tool of PANDA, includes the methods for differentially expressed protein detection, missing value imputation and the parametric and non-parametric statistical tests. Meanwhile, the most commonly-used data visualization methods are also implemented in PANDA-view. -
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MACE Algebraic Calculator
MACE is a Mathematical program for Algorithms, Calculations, Equations
...It is designed to be as easy to run as a hand-held calculator. The goal is a neat tool covering all fields of mathematics at advanced highschool and university level. MACE has 230 logical operations, statistical distributions and functions in the fields Analysis, Arithmetic, Complex Functions, Linear Algebra, Differential Calculus, Statistics and Signal Processing. MACE provides a dialog, which supports you to insert functions intuitively. Moreover Mace has a comprehensive help menu to support the user. MACE has also its own skripting language for the advanced user. ... -
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Presage
the intelligent predictive text entry platform
...Presage computes probabilities for words which are most likely to be entered next by merging predictions generated by the different predictive algorithms. Presage's modular and extensible architecture allows its language model to be extended and customized to utilize statistical, syntactic, and semantic predictive algorithms. Presage's predictive capabilities are implemented by predictive plugins. Predictive plugins use services provided by the platform to implement multiple prediction techniques. -
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2D Statistical Models. Building: shape model, texture model and concatenated appearance model; Fitting: 1D profile ASM, 2D profile ASM, direct local texture constrained(LTC) ASM, basic AAM, ICIA AAM, IAIA AAM, etc.
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fcGENE: Genotype format converter
Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated by... -
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GenCodeGenerator
C++ class to generate biologically plausible genetic codes
The "GeneticCode" C++ class is designed to generate versions of the genetic code subject to the requirements of the three major models of the genetic code origin and evolution (about these models see, e.g., Koonin & Novozhilov, 2009, IUBMB Life). This class was written specifically to perform statistical test for the paper Makukov & shCherbak (2017), but it might be used for a wider class of studies related to the genetic code. By default, the class "GeneticCode" generates alternative genetic codes, with the reqirement of block structure, and, optionally, with the assumption of stereochemical or biosynthetic models (to impose the assumption of the adaptive model, simply filter the codes using the error_cost() function). ... -
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3DBrainExplorer is a lightweight OpenGL-based 3D renderer for scientific visualization of volumetric data (NIfTI) featuring real-time image manipulation, AAL brain labels (Tzourio-Mazoyer et al., 2002), SPM5 statistical images and stereo display.
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Saguaro Genome-Wide is a program to detect signatures of selection within populations, strains, or species. It takes SNPs or nucleotides as input, and creates statistical local phylogenies for each region in the genome.
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VoynichReader
Voynich Manuscript viewer.
Software for viewing, searching & analysing Prof. Stolfi's interlinear transcription of the Voynich Manuscript. -
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Phrasal
Statistical phrase-based machine translation system
Stanford Phrasal is a state-of-the-art statistical phrase-based machine translation system, written in Java. At its core, it provides much the same functionality as the core of Moses. Distinctive features include: providing an easy to use API for implementing new decoding model features, the ability to translating using phrases that include gaps (Galley et al. 2010), and conditional extraction of phrase-tables and lexical reordering models. -
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Grepo-Tool
Grepolis utility
Map viewer and planning utility for Grepolis. The program uses freely accessible data to produce maps and allows for strategical planning of game actions. Grepolis itself is a multiplayer online game and is the intellectual property of InnoGames GmbH To install grepotool, please download the ZIP-File and unpack it into a writable directory. In addition, you may need to install OpenSSL (32-Bit version) and copy three DLLs manually into the grepotool/bin directory. Attention: To include... -
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Excelsi-R
Excel's Interface to R
Excelsi-R is an Excel add-in that allows Excel spreadsheets to harness the power of the R statistical language by connecting to a running R process. R does not need to be installed on the computer running Excel, but it does require access to an R instance running Rserve (which can be on a remote computer). It supports incorporating R plots and graphs in an Excel workbook. -
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An encryption standard based on the chaotic properties of the logistic map function. With a pseudo-random byte generator, this cipher offers encryption with great statistical improbability.
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IRST LM Toolkit
A toolkit for language modeling.
...Please visit the new IRSTLM official website: http://hlt-mt.fbk.eu/technologies/irstlm IRSTLM: A tool for the estimation, representation, and computation of statistical language models. IRSTLM, the IRST Language Modeling Toolkit, features algorithms and data structures suitable to estimate, store, and access very large n-gram language models. Our software has been integrated into a popular open source Statistical Machine Translation decoder called Moses, and is compatible with language models created with other tools, such as the SRILM Tooolkit. -
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Adaptive Gaussian Filtering
Machine learning with Gaussian kernels.
Libagf is a machine learning library that includes adaptive kernel density estimators using Gaussian kernels and k-nearest neighbours. Operations include statistical classification, interpolation/non-linear regression and pdf estimation. For statistical classification there is a borders training feature for creating fast and general pre-trained models that nonetheless return the conditional probabilities. Libagf also includes clustering algorithms as well as comparison and validation routines. ... -
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myCStock
An other free stock market software in C++/Python
A parser for real-time update of stock market prices and a graphical interface with technical indicators. It is a small personal project initiated for extending my knowledge in C++ and Python, designing a GUI and, in a next stage, applying mathematical and statistical models to stock market prices analysis and prediction. If you have the same interest than I in experimenting and disussing design software and statistical models in finance, you are welcome to join the project. If you are searching for a stable and complete software, you may come back later on... At the moment, the documentation is available on the Wiki and the source codes contain a doxygen configuration files which must compiled after downloading the source. -
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The Thot toolkit repository has moved to http://daormar.github.io/thot/ Thot is a toolkit for statistical machine translation. The new Thot toolkit includes fully automatic and interactive machine translation, incremental training of statistical models, parallel estimation, ...
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MThreaded/OO NIST Statistical Suite
Multithreaded & OO NIST Statistical Test Suite (C++ version)
This project is a Multithreaded & OO C++ version of NIST Statistical Test Suite which has been developed by Juan Soto in 1999. This is object oriented so that you can use it easily in your programs. Also you can use the power of parallelism cause it is multithreaded. Enjoy it! -
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DeSR is a multilingual statistical dependency parser. It produces dependency parse trees for natural language sentences using a parsing model learned from annotated corpora.
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A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).
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BiomeNet
BAYESIAN INFERENCE OF METABOLIC DIVERGENCE AMONG MICROBIAL COMMUNITIES
Metagenomics yields enormous numbers of microbial sequences that can be assigned a metabolic function. Using such data to infer community-level metabolic divergence is hindered by the lack of a suitable statistical framework. Here, we describe a novel hierarchical Bayesian model, called BiomeNet (Bayesian inference of metabolic networks), for inferring differential prevalence of metabolic networks among microbial communities. To infer the structure of community-level metabolic interactions, BiomeNet applies a mixed-membership modelling framework to enzyme abundance information. ... -
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ASEP
Monte Carlo Simulations of Asymmetric Exclusion Processes
Monte Carlo simulations of various classes of asymmetric exclusion processes (ASEP) with open and periodic boundaries. ASEP is a paradigmatic model of non equilibrium statistical mechanics. It can be utilized to model various non-equilibrium phenomena in Biology such as molecular motor transport and protein synthesis. The code's comments will be gradually expanded upon; if there are mistaken or unclear comments they will be corrected. We cannot give an estimation as to when because this is a side-project of ours, and the comments are not crucial to the code's workings.
