Search Results for "bio-bwa-files"
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Showing 30 open source projects for "bio-bwa-files"
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Charmol
Program for molecular graphics
Charmol is a cross-platform GUI/command-line based program for making high-quality pictures of molecular structures, nowadays working on Linux, MacOS and Windows. As output, it produces POV-Ray rendered images or files in VRML format. Charmol is capable of making pictures containing: - from small- to large-size molecules - more molecules together (different settings possible) - orbitals using molden and fchk files (GTO functions up to 'h' angular momentum supported) - surfaces... -
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DNSzoneView
This application is intended to provide an overview of a site's own au
This application is intended to provide an overview of a site's own authoritative named (DNS) server's "zone" files. Note that it does NOT create or modify any files - so don't expect to use this application to "set up" a DNS server. There are three parts to the DNSzoneView document: a) brief numerical summary of zone RR counts b) scatter plot of zone files relative to number of RR records and last-modified date-time of a zone file c) a listing of configured "local" zone files... -
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thoughtbot dotfiles
A set of vim, zsh, git, and tmux configuration files
After the initial installation, you can run rcup without the one-time variable RCRC being set (rcup will symlink the repo's rcrc to ~/.rcrc for future runs of rcup). This command will create symlinks for config files in your home directory. Setting the RCRC environment variable tells rcup to use standard configuration options. Exclude the README.md, README-ES.md and LICENSE files, which are part of the dotfiles repository but do not need to be symlinked in. Give precedence to personal overrides... -
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Hetionet
Hetionet: an integrative network of disease
Hetionet is a hetnet — network with multiple node and edge (relationship) types — which encodes biology. The hetnet was designed for Project Rephetio, which aims to systematically identify why drugs work and predict new therapies for drugs. The JSON and Neo4j formats contain node and edge properties, which are absent in the TSV and matrix formats, including licensing information. Therefore the recommended formats are JSON and Neo4j. Our hetio package in Python reads the JSON format, but it... -
Powerful small business accounting softwareWith AccountEdge, business owners can organize, process, and report on their financial information so they can focus on their business. Features include: accounting, integrated payroll, sales and purchases, contact management, inventory tracking, time billing, and more.
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Fast Neurite Tracer
Semi-automatic neurite tracing with tera-bytes of imaging data.
... to SWC files, * automatic detection of cycles during tracing, * support for data of multiple channels, * support for both 8-bit and 16-bit image data. -
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MyCollab - Project Management Software
task management, bug tracking, kanban, project management
... not need to edit configuration files manually as many other Java programs. MyCollab is the final choice of many organizations to find the best software for their usages. It covers all areas of project management; it's worth to try. Installation ======== * Download MyCollab binary - https://www.mycollab.com/self-hosted/ * Follow installation guideline at https://community.mycollab.com/docs/hosting-mycollab-on-your-own-server/installing-mycollab/ -
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... is a commandline program that can easily be used in pipelines. For more information check the README.md in the Files section. How to cite ADOMA: Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083 http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract
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docx2txt
Perl based utility to extract formatted text content from MS Docx file
Docx2txt is a Perl based command-line utility to convert (even corrupted) Microsoft docx documents to reasonably formatted text files, along with appropriate character conversions. Apart from Perl it also requires a command line unzipping program like unzip/7z/pkzipc/wzunzip. -
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KISSmenu
KeepItSimple: organize&integrate your tools in a non-/interactive menu
Do you have dozens of tools with dozens of parameters? KISSmenu helps you to organize them, to integrate them and to run them interactively in a terminal based menu or automatically, e.g. starting it up as a cron job. Development or tooling environment: shortcut based menu of commands, which can be used both interactively and non-interactively. Middleware: simply integrates various software through environment variables. Really simple! A 500 lines long bash script easy to maintain,... -
Enterprise and Small Business CRM Solution | Clear C2 C2CRMC2CRM consists of four modules that integrate to provide a comprehensive CRM solution: Relationship Management, Sales Automation, Marketing Automation, and Customer Service. Only buy what each user needs.
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Portable Linux
Portable Ubuntu Linux for Scientific Computing
Released August 22, 2013 Lubuntu Blends: Biochemistry 13.04 (Raring) v5.44 Linux Kernel Image 3.8.0-29 Lubuntu Blends are pre-installed Wubi disk image remixes of Ubuntu and Debian Science meta packages, A custom boot loader allows installations to be copied and automatically booted from most external or USB flash drives. Once up and running, use earlier Lubuntu Remix README instructions here until documentation is updated. https://sourceforge.net/projects/portable-linux/files... -
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pdf2mp3
Simply convert your PDF files into audio books
Summary: Your eyes are tired of looking into the tablet or cell-phone screen reading ebooks? You have difficulty reading from LCD screen specially in a driving vehicle? This software is for you! It converts your PDF files to MP3 audio books. Special Features (Compared to similar projects): Each page is in a separate MP3 file. Created MP3 files have ID3v2 tags showing Book name and page number. Multi-threaded conversion, means all CPU cores will be used thus multiple times faster... -
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A project to provide change control for OpenDocument files via subversion under Unix. Can check in internal changes in files and allows users to recover any previous version, view logs and compare with older versions.
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Decision Table Preprocessor
Ccide is a Decision Table preprocessor.
Ccide reads a source program, in one of several programming languages, expands all embedded decision tables, and generates the new, expanded source. Ccidew processes C language programs directly. The script, ccide, uses ccidew and m4, to process BASIC, JAVA, CC, C++, BASH, QB, VB, and EX(euphoria), source files containing embedded decision tables. Ccide checks all conditions once and only once, avoiding side effects. Ccide checks tables for conflicts and other errors. Input... -
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|es|f| esniper frontend
HTML frontend for esniper - running on your own server
|es|f| is a web based HTML frontend for esniper, a lightweight console application for sniping eBay auctions. It's written in PHP + Javascript and uses text files for all data storage, no database required. Featuring extensions (modules and plugins), events handling, translations with TMX format, web based configuration. Install |es|f| and esniper on your own server and enjoy bidding. -
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MASyV (Multi-Agent System Visualization) enables one to write agent-based models/cellular automata, eg. in C, visualize them in real time & capture to movie file with MASyVs GUI & message passing lib. Includes examples: Hello World, ants, viral infection
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Backup script for Windows based on robocopy Fast backup, syncs changed files only. Space efficient, all duplicate files are Hardlinked. Easy Overview of destination folder Structure: Computer Name > Date_Time > Drive > Folder > File
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A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
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Utility to validate, extract, show and create digital documents included in files with "pk7" and "fp7" extensions such as electronic bills provided by some phone companies in Spain like Movistar and Telefonica.
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BCAR is a library for the associative classification, which denotes "Boosting Class Association Rules". BCAR provides a general tool for classification tasks with various types of input data.
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ProgPorts is an administrative and easy user interface to hundreds of proteomics, molecular dynamics, and protein crystallography programs. It is a hybrid of the prog/setup system, developed at Johns Hopkins University, and GNU-Darwin ports system.
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JMrTools, is inspired by the MrTools Perl Project (Written by Robert Marino). This JAVA project implements ssh telnet, scp, rsync, sftp, ftp, and stdio. Providing execution/transfer of commands, script, or files on Multiple hosts concurrently.
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NoteJot is a command-line driven shell script for managing notes. Usability is a primary goal allowing notes to be easily added, removed, edited, listed, and searched. Files can be attached to notes and notes can be grouped via categorization tags.
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A Folding@Home integrated monitoring environment, designed for Linux, *nix systems and Windows, which is intended to be easy-to-use and provide a flexible, customiseable and "user-friendly" environment for reviewing the status of active F@H clients.
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Searches for font files, sorts them into folders by name and look and with human readable names, stores gathered font information in a database, can generate previews and posters, can find and remove duplicates and can reunite PostScript font families.