Search Results for "assembly source code"
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Showing 135 open source projects for "assembly source code"
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pydna
Clone with Python! Data structures for double stranded DNA
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning. Planning genetic constructs with many parts and assembly steps, such as recombinant metabolic pathways, are often difficult to properly document as is evident from the poor state of documentation in the scientific literature. The pydna python package provide a human-readable formal description of cloning and genetic assembly strategies in Python which... -
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H2O Wave
Realtime Web Apps and Dashboards for Python and R
No HTML, CSS, Javascript skills are required. Build rich, interactive web apps using pure Python. Broadcast live information, visualizations, and graphics using Wave's low-latency real-time server. Instant control over every connected web browser using a simple and intuitive programming model. Preview your app live as you code. Dramatically reduce the time and effort to build web apps. Easily share your apps with end-users, get feedback, improve and iterate. ~10MB static executables for... -
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Mage.ai
Build, run, and manage data pipelines for integrating data
...That’s why we designed an easy developer experience that you’ll enjoy. Each step in your pipeline is a standalone file containing modular code that’s reusable and testable with data validations. No more DAGs with spaghetti code. Start developing locally with a single command or launch a dev environment in your cloud using Terraform. Write code in Python, SQL, or R in the same data pipeline for ultimate flexibility. -
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geemap
A Python package for interactive geospaital analysis and visualization
A Python package for interactive geospatial analysis and visualization with Google Earth Engine. Geemap is a Python package for geospatial analysis and visualization with Google Earth Engine (GEE), which is a cloud computing platform with a multi-petabyte catalog of satellite imagery and geospatial datasets. During the past few years, GEE has become very popular in the geospatial community and it has empowered numerous environmental applications at local, regional, and global scales. GEE... -
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Positron
Positron, a next-generation data science IDE
Positron is a next-generation integrated development environment (IDE) created by Posit PBC (formerly RStudio Inc) specifically tailored for data science workflows in Python, R, and multi-language ecosystems. It aims to unify exploratory data analysis, production code, and data-app authoring in a single environment so that data scientists move from “question → insight → application” without switching tools. Built on the open-source Code-OSS foundation, Positron provides a familiar coding experience along with specialized panes and tooling for variable inspection, data-frame viewing, plotting previews, and interactive consoles designed for analytical work. ... -
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Cookiecutter Data Science
Project structure for doing and sharing data science work
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. When we think about data analysis, we often think just about the resulting reports, insights, or visualizations. While these end products are generally the main event, it's easy to focus on making the products look nice and ignore the quality of the code that generates them. Because these end products are created programmatically, code quality is still important! And we're not talking... -
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miepython
Mie scattering of light by perfect spheres
miepython is a pure Python module to calculate light scattering for non-absorbing, partially-absorbing, or perfectly-conducting spheres. Mie theory is used, following the procedure described by Wiscombe. This code has been validated against his results. This code provides functions for calculating the extinction efficiency, scattering efficiency, backscattering, and scattering asymmetry. Moreover, a set of angles can be given to calculate the scattering for a sphere at each of those angles. -
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Apache Airflow
Programmatically author, schedule, and monitor workflows
Apache Airflow is a community-created platform for programmatically authoring, scheduling, and monitoring workflows. It’s much easier to do all these things when workloads are defined as code. They become more versionable, testable, maintainable and collaborative. With Airflow you can author workflows as directed acyclic graphs (DAGs) of tasks. This means that your tasks are executed on an array of workers while following the specified dependencies. And with rich command line utilities in... -
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Mercury
Convert Python notebook to web app and share with non-technical users
Turn Python notebooks to web applications with open-source Mercury framework. Hide code and add interactive widgets. Non-technical users can tweak widgets and execute notebook with new parameters. The core of Mercury is Open Source under AGPLv3. We provide Mercury Pro with additional features, dedicated support and friendly commercial license. Mercury is a perfect tool to convert Python notebook to interactive web application and share with non-programmers. -
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Modin
Scale your Pandas workflows by changing a single line of code
Scale your pandas workflow by changing a single line of code. Modin uses Ray, Dask or Unidist to provide an effortless way to speed up your pandas notebooks, scripts, and libraries. Unlike other distributed DataFrame libraries, Modin provides seamless integration and compatibility with existing pandas code. Even using the DataFrame constructor is identical. It is not necessary to know in advance the available hardware resources in order to use Modin. Additionally, it is not necessary to... -
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ClearML
Streamline your ML workflow
ClearML is an open source platform that automates and simplifies developing and managing machine learning solutions for thousands of data science teams all over the world. It is designed as an end-to-end MLOps suite allowing you to focus on developing your ML code & automation, while ClearML ensures your work is reproducible and scalable. The ClearML Python Package for integrating ClearML into your existing scripts by adding just two lines of code, and optionally extending your experiments and other workflows with ClearML powerful and versatile set of classes and methods. ... -
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Dash
Build beautiful web-based analytic apps, no JavaScript required
Dash is a Python framework for building beautiful analytical web applications without any JavaScript. Built on top of Plotly.js, React and Flask, Dash easily achieves what an entire team of designers and engineers normally would. It ties modern UI controls and displays such as dropdown menus, sliders and graphs directly to your analytical Python code, and creates exceptional, interactive analytics apps. Dash apps are very lightweight, requiring only a limited number of lines of Python or... -
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Dask
Parallel computing with task scheduling
Dask is a Python library for parallel and distributed computing, designed to scale analytics workloads from single machines to large clusters. It integrates with familiar tools like NumPy, Pandas, and scikit-learn while enabling execution across cores or nodes with minimal code changes. Dask excels at handling large datasets that don’t fit into memory and is widely used in data science, machine learning, and big data pipelines. -
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QuantDinger
AI-driven, local-first quantitative trading platform for research
...QuantDinger also incorporates optional AI features via external APIs, assisting in tasks like strategy ideation or interpreting market indicators, but strategy logic remains inspectable and transparent in code. -
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CKAN
CKAN is an open-source DMS for powering data hubs
CKAN is the world’s leading open-source data portal platform. CKAN makes it easy to publish, share and work with data. It's a data management system that provides a powerful platform for cataloging, storing and accessing datasets with a rich front-end, full API (for both data and catalog), visualization tools and more.CKAN is used by national and regional government organizations throughout the European Union, the Americas, Asia, and Oceania to power a variety of official and community data... -
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Matplotlib
matplotlib: plotting with Python
Matplotlib is a comprehensive library for creating static, animated, and interactive visualizations in Python. Matplotlib makes easy things easy and hard things possible. Matplotlib ships with several add-on toolkits, including 3D plotting with mplot3d, axes helpers in axes_grid1 and axis helpers in axisartist. A large number of third party packages extend and build on Matplotlib functionality, including several higher-level plotting interfaces (seaborn, HoloViews, ggplot, ...), and a... -
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Google Spreadsheets Python
Google Sheets Python API
gspread is a Python API for Google Sheets. A service account is a special type of Google account intended to represent a non-human user that needs to authenticate and be authorized to access data in Google APIs [sic]. Since it’s a separate account, by default it does not have access to any spreadsheet until you share it with this account. Just like any other Google account. To access spreadsheets via Google Sheets API you need to authenticate and authorize your application. Older versions of... -
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Tally
Let agents classify your bank transactions
Tally is an open-source, AI-assisted tool designed to automate the classification of personal financial transactions, helping users turn raw bank data into meaningful categories without manual tagging. At its core, Tally pairs a local rule engine with large language models so that an AI assistant (like Claude Code, Copilot, or any CLI agent) interprets, suggests, and categorizes expenses, savings, subscriptions, and income events based on your own rules and behavior. -
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VisiData
A terminal spreadsheet multitool for discovering and arranging data
...VisiData supports tsv, CSV, SQLite, JSON, xlsx (Excel), hdf5, and many other formats. Requires Linux, OS/X, or Windows (with WSL). Hundreds of other commands and options are also available; see the documentation. Code in the stable branch of this repository, including the main vd application, loaders, and plugins, is available for use and redistribution under GPLv3. VisiData is a free, open-source tool that lets you quickly open, explore, summarize, and analyze datasets in your computer’s terminal. VisiData works with CSV files, Excel spreadsheets, SQL databases, and many other data sources. -
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AutoGluon
AutoGluon: AutoML for Image, Text, and Tabular Data
AutoGluon enables easy-to-use and easy-to-extend AutoML with a focus on automated stack ensembling, deep learning, and real-world applications spanning image, text, and tabular data. Intended for both ML beginners and experts, AutoGluon enables you to quickly prototype deep learning and classical ML solutions for your raw data with a few lines of code. Automatically utilize state-of-the-art techniques (where appropriate) without expert knowledge. Leverage automatic hyperparameter tuning,... -
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Covalent workflow
Pythonic tool for running machine-learning/high performance workflows
Covalent is a Pythonic workflow tool for computational scientists, AI/ML software engineers, and anyone who needs to run experiments on limited or expensive computing resources including quantum computers, HPC clusters, GPU arrays, and cloud services. Covalent enables a researcher to run computation tasks on an advanced hardware platform – such as a quantum computer or serverless HPC cluster – using a single line of code. Covalent overcomes computational and operational challenges inherent... -
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NautilusTrader
A high-performance algorithmic trading platform
NautilusTrader is an open-source, high-performance, production-grade algorithmic trading platform, provides quantitative traders with the ability to backtest portfolios of automated trading strategies on historical data with an event-driven engine, and also deploy those same strategies live, with no code changes. The platform is 'AI-first', designed to develop and deploy algorithmic trading strategies within a highly performant and robust Python native environment. -
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marimo
A reactive notebook for Python
marimo is an open-source reactive notebook for Python, reproducible, git-friendly, executable as a script, and shareable as an app. marimo notebooks are reproducible, extremely interactive, designed for collaboration (git-friendly!), deployable as scripts or apps, and fit for modern Pythonista. Run one cell and marimo reacts by automatically running affected cells, eliminating the error-prone chore of managing the notebook state. marimo's reactive UI elements, like data frame GUIs and plots,... -
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AWS SDK for pandas
Easy integration with Athena, Glue, Redshift, Timestream, Neptune
aws-sdk-pandas (formerly AWS Data Wrangler) bridges pandas with the AWS analytics stack so DataFrames flow seamlessly to and from cloud services. With a few lines of code, you can read from and write to Amazon S3 in Parquet/CSV/JSON/ORC, register tables in the AWS Glue Data Catalog, and query with Amazon Athena directly into pandas. The library abstracts efficient patterns like partitioning, compression, and vectorized I/O so you get performant data lake operations without hand-rolling... -
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VectorVein
No-code AI workflow
Use the power of AI to build your personal knowledge base + automated workflow. No programming, just dragging to create a strong workflow and automate all tasks. Vector vein is affected LangChain as well as langflow The uncode AI workflow software developed by the inspiration aims to combine the powerful capabilities of large language models and allow users to realize the intelligibility and automation of various daily workflows through simple drag. After the software is opened normally,...
