Showing 163 open source projects for "tools"

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  • 1
    scipion-xmipp

    scipion-xmipp

    Image processing framework to integrate EM software packages.

    ...It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated into Scipion and contains the algorithms in the core libraries and command line programs.
    Downloads: 0 This Week
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  • 2
    ADOMA
    ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW....
    Downloads: 0 This Week
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  • 3

    iMir

    Integrated pipeline for HT miRNA-Seq data analysis

    Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular pipeline, called iMir, integrating multiple open source modules and resource in an automated workflow, devising different statistical approaches to analyze data rigorously. iMir comprises also a Graphical User Interface (GUI), so that the pipeline is particularly suited for biologist and early stage bioinformaticians and produces both graphics and text outputs.
    Downloads: 0 This Week
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  • 4

    Data Migration Tools for RDBMS

    DataMigrator for 14 major databases

    Touch and go Windows command line data migration tool for 14 databases: 1. Sybase ASE 2. Informix Innovator C 3. Sybase SQL Anywhere 4. DB2 UDB 5. SQLServer 6. MariaDB 7. Sybase IQ 8. PostgreSQL 9. MySQL 10. Informix IDS 11. TimesTen 12. Oracle 13. SQL Lite 14. Exadata
    Downloads: 0 This Week
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  • 5
    Optimal BPM

    Optimal BPM

    The beat of your business

    [See the files section for installation instructions] Optimal BPM™ is a project that aims to create an easy-to-use Business Process Management system (BPM) and tools. So far, only the tools, and only a data replication tool, Optimal Sync, has been released (available from the "files" page). But more is coming. It incorporates many different open source projects that relates to interoperability, transformation, context and process control. It has no business engine, instead it generates Python code and leaves the engine mechanics to its scripting engine. ...
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  • 6

    Larch: Data Analysis for X-ray Spectra

    Data Processing and Analysis for X-ray Spectroscopy and More

    Larch is a scientific data processing language that is designed to be easy to use for novices and complete enough for advanced data processing and analysis. Larch provides a wide range of functionality for dealing with arrays of scientific data, and basic tools to make it easy to use and organize complex data. Larch has been primarily developed for dealing with x-ray spectroscopic and scattering data, especially the kind of data collected at modern synchrotrons and x-ray sources. Larch is written in Python and relies heavily on the standard tools for scientific computing with Python (numpy, scipy, matplotlib, and h5py).
    Downloads: 2 This Week
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  • 7
    Pathomx

    Pathomx

    Workflow-based data analysis built on IPython

    Pathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended and can now be used for any scientific and non-scientific data analysis.
    Downloads: 0 This Week
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  • 8

    Oracle -> SQLServer DataMigrator

    Copy/pipe your scalar data from Oracle to SQLServer

    Command-line tool lets you copy table data from Oracle to SQLServer database. Touch and go design.
    Downloads: 0 This Week
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  • 9

    pyhome

    Python scripts we use to organize our family business

    pyhome consists of three command-line tools: 1) a CRM (fancy word for address book) 2) a Kanban task manager 3) bank account summary
    Downloads: 0 This Week
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  • 10

    slycat

    Web-based data science analysis and visualization platform.

    This is Slycat - a web-based data science analysis and visualization platform, created at Sandia National Laboratories. The goal of the Slycat project is to develop processes, tools and techniques to support data science, particularly analysis of large, high-dimensional data.
    Downloads: 0 This Week
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  • 11

    Debian Unstable/testing alpha.

    Pre-Alpha Console distro for high performance Linux computing.

    ...Final alpha release features: ======== * Usb image * General debian repos * VM optimizations * Hugepages by default * CGROUPs optimized by default * ALSA * Latest Debugging / Baremetal kernels * Full Haswell and MIC support in test * Full optimized python support * Full optimized perl support * Java compliance * IPv6 full stack with IPsets * Multipath storage * Overclocking tools * Student/Developer scripts. (git pull, builders) * i915 latest support drivers and gallium. * Kernel patching, testing featurettes * Wi-Fi and bluetooth ipv4 support * Latest GCC versions * Qt, Java, Maven, Desktop improvements Notes ==== Basic Console Pre-alpha build Test and rate for improvemen
    Downloads: 0 This Week
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  • 12
    MoDAVE aims at providing data analysis and visualization extensions to Mosaic datasets, including cubed sphere data, to the Climate Data Analysis Tools (CDATA) in particular.
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  • 13
    Pumilio
    Pumilio is a web-based sound analysis and archive system for almost any kind of sound file with tools to see the spectrogram of the sound, select regions for further analysis and insertion in a database, filtering, and many other manipulations.
    Downloads: 0 This Week
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  • 14
    Our goal is to find out useful and funny ways for expanding the possibilities of many FOSS by integrating them with other FOSS and proprietary systems. You'll find here many open source plugins and extensions useful to put those FOSS hermits together.
    Downloads: 0 This Week
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  • 15
    Portable Linux

    Portable Linux

    Portable Ubuntu Linux for Scientific Computing

    ...Overview LAMP stack running on localhost (127.0.0.1). Scientific, productivity & media packages include R (Rattle Data Miner), GridEngine, Condor, cooperative computing tools, WINE, LibreOffice, Evolution, Clinica, Neuro Debian Desktop, PsycoPy, OpenVibe, 3DSlicer, Paraview, Openshot. Cheers, Gregory Remington
    Downloads: 0 This Week
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  • 16
    Reader xpdl documents, BPM tools, convert in db project structure.
    Downloads: 0 This Week
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  • 17
    Adawat Arabic Text tools

    Adawat Arabic Text tools

    Adawat Arabic Text tools

    Arabic Text tools, like remove Harakats, AutoCorrect, Normalize, Insert Symbols, etc.
    Downloads: 2 This Week
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  • 18

    Electrophysiology & circular stats tools

    Data analysis and circular statistics with OpenElectrophy and R

    Set of tools for basic analysis of electrophysiological data. The Python classes show how to call OpenElectrophy functions and save data. The R library applies circular statistics to spike phase data and saves the best von Mises fit and the Rayleigh statistics on the disk. The wavelet coherence analysis is done in R by the package "sowas".
    Downloads: 0 This Week
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  • 19

    Harmoni Local Search Engine

    Python-Based Application

    ...It can also search any keywords in some formats of document, such as; .txt, html, docx, xlsx, pptx, and pdf. Harmoni is a fast search Engine, it also supported by some tools; multi deleting, renaming, moving, and so fourth. It is just like google on your computer. It is recommended for anyone who are working with office documents.
    Downloads: 0 This Week
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  • 20
    PROJECT MOVED: see http://www.vmtk.org for up-to-date information. Libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis in image-based blood vessel modeling.
    Downloads: 0 This Week
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  • 21
    This is where web developers can get tools that can make their life easier. Web technologies and languages used contain but are not limited to HTML, XHTML, CSS, JavaScript, PHP, and AJAX. All code is extremely slim, fast running, and is W3C compliant.
    Downloads: 0 This Week
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  • 22
    A GPR processer and viewer written in Python!
    Downloads: 0 This Week
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  • 23
    cca-forum
    Cca-forum unifies the Common Component Architecture tools and tutorial. It includes the CCA specifications, the Ccaffeine framework for HPC, and related tools. These support multilanguage scientific and parallel computing.
    Downloads: 0 This Week
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  • 24
    The Zahlemann site used to be the home of the Zahlemann project (which currently sleeps). Now I use it for different little tools I write. See project home page (http://zahlemann.sourceforge.net) for more information.
    Downloads: 0 This Week
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  • 25
    pyastrolib is a python library providing professional astronomers a robust set of tools for astronomical data analysis. This project will provide all the functionality as NASA's IDL Astronomy User's Library in addition to other planned features.
    Downloads: 0 This Week
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