Search Results for "ipython"

Python for Data Analysis is the official companion repository for Python for Data Analysis, 3rd Edition by Wes McKinney. It contains the datasets, examples, and IPython notebooks used throughout the book. The repository helps readers practice Python data analysis concepts directly in Jupyter Notebook. Its chapters cover Python basics, NumPy, pandas, data loading, cleaning, wrangling, visualization, time series, modeling libraries, and full analysis examples. The project includes setup options using uv or Conda, with dependency files to reproduce the working environment. ...

IPyPlot is a small python package offering fast and efficient plotting of images inside Python Notebooks. It's using IPython with HTML for faster, richer and more interactive way of displaying big numbers of images.

...Its dataset-oriented, declarative API lets you focus on what the different elements of your plots mean, rather than on the details of how to draw them. Behind the scenes, seaborn uses matplotlib to draw its plots. For interactive work, it’s recommended to use a Jupyter/IPython interface in matplotlib mode, or else you’ll have to call matplotlib.pyplot.show() when you want to see the plot.

A native macOS application to view Jupyter/IPython notebooks.

3d plotting for Python in the Jupyter notebook based on IPython widgets using WebGL. Create quiver plots (like scatter, but with an arrow pointing in a particular direction). Render in the Jupyter notebook, or create a standalone html page (or snippet to embed in your page). Render in stereo, for virtual reality with Google Cardboard. Animate in d3 style, for instance, if the x coordinates or color of a scatter plots changes.

Algorithm Visualizer for IPython/Jupyter Notebook. If you use the display(TracerObject) code from where you want to see, you can use it without any special modification.

...It is an IDE that has been built especially for data science/Machine Learning in Python and you can also very simply think of it as a light weight alternative to the IPython Notebook.

...However, open and standard pipelines to perform RNA-seq analysis by non-experts remain challenging due to the large size of the raw data files and the hardware requirements for running the alignment step. Here we introduce a reproducible open source RNA-seq pipeline delivered as an IPython notebook and a Docker image. The pipeline uses state-of-the-art tools and can run on various platforms with minimal configuration overhead. The pipeline enables the extraction of knowledge from typical RNA-seq studies by generating interactive principal component analysis (PCA) and hierarchical clustering (HC) plots, performing enrichment analyses against over 90 gene set libraries, and obtaining lists of small molecules that are predicted to either mimic or reverse the observed changes in mRNA expression.

Pathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended and can now be used for any scientific and non-scientific data analysis.