Search Results for "bio-bwa-files"
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Showing 27 open source projects for "bio-bwa-files"
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MAT.jl
Julia module for reading MATLAB files
Julia module for reading MATLAB files. Read and write MATLAB files in Julia. This library can read MATLAB .mat files, both in the older v4/v5/v6/v7 format, as well as the newer v7.3 format. -
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XLSX.jl
Excel file reader and writer for the Julia language
XLSX.jl is a Julia package to read and write Excel spreadsheet files. Internally, an Excel XLSX file is just a Zip file with a set of XML files inside. The formats for these XML files are described in the Standard ECMA-376. This package follows the EMCA-376 to parse and generate XLSX files. -
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CliMA Land
Everything within the Land model
... and examples for users, rather than a place to store the code for all sub-modules. This project is supposed to be a community effort, leveraging all the work that has been done in Land Surface Modeling from various groups around the world. The ultimate goal is to build a bio-physical model that represents the state of the art and can be coupled to the CliMA Earth System Model (ESM), i.e. Caltech's CliMA initiative. -
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JLD.jl
Saving and loading julia variables while preserving native types
JLD, for which files conventionally have the extension .jld, is a widely used format for data storage with the Julia programming language. JLD is a specific "dialect" of HDF5, a cross-platform, multi-language data storage format most frequently used for scientific data. By comparison with "plain" HDF5, JLD files automatically add attributes and naming conventions to preserve type information for each object. For lossless storage of arbitrary Julia objects, the only other complete solution... -
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ReTest.jl
Testing framework for Julia
ReTest is a testing framework for Julia allowing defining tests in source files, whose execution is deferred and triggered on demand. This is useful when one likes to have definitions of methods and corresponding tests close to each other. This is also useful for code that is not (yet) organized as a package, and where one doesn't want to maintain a separate set of files for tests. Filtering run testsets with a Regex, which is matched against the descriptions of testsets. This is useful... -
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NetCDF.jl
NetCDF support for the julia programming language
NetCDF support for the Julia programming language, there is a high-level and a medium-level interface for writing and reading netcdf files. The dimensions "x1" and "t" of the variable are called "x1" and "t" in this example. If the dimensions do not exist yet in the file, they will be created. The dimension "x1" will be of length 10 and have the values 11..20, and the dimension "t" will have length 20 and the attribute "units" with the value "s". -
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NCDatasets.jl
Load and create NetCDF files in Julia
NCDatasets allows one to read and create netCDF files. NetCDF data set and attribute list behave like Julia dictionaries and variables like Julia arrays. This package implements the CommonDataModel.jl interface, which means that the datasets can be accessed in the same way as GRIB files opened with GRIBDatasets.jl. -
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CSV
Utility library for working with CSV and other delimited files
Welcome to CSV.jl! A pure-Julia package for handling delimited text data, be it comma-delimited (csv), tab-delimited (tsv), or otherwise. A fast, flexible delimited file reader/writer for Julia. -
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JLD2
HDF5-compatible file format in pure Julia
JLD2 saves and loads Julia data structures in a format comprising a subset of HDF5, without any dependency on the HDF5 C library. JLD2 is able to read most HDF5 files created by other HDF5 implementations supporting HDF5 File Format Specification Version 3.0 (i.e. libhdf5 1.10 or later) and similarly, those should be able to read the files that JLD2 produces. JLD2 provides read-only support for files created with the JLD package. The save and load functions, provided by FileIO, provide... -
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NBInclude.jl
import code from IJulia Jupyter notebooks into Julia programs
NBInclude is a package for the Julia language that allows you to include and execute IJulia (Julia-language Jupyter) notebook files just as you would include an ordinary Julia file. The goal of this package is to make notebook files just as easy to incorporate into Julia programs as ordinary Julia (.jl) files, giving you the advantages of a notebook (integrated code, formatted text, equations, graphics, and other results) while retaining the modularity and re-usability of .jl files. -
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Shapefile.jl
Parsing .shp files in Julia
This library supports reading and writing ESRI Shapefiles in pure Julia. -
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FileTrees.jl
Parallel file processing made easy
Easy everyday parallelism with a file tree abstraction. Read a directory structure as a Julia data structure, (lazy-)load the files, apply map and reduce operations on the data while not exceeding available memory if possible. Make up a file tree in memory, create some data to go with each file (in parallel), write the tree to disk (in parallel). FileTrees is a set of tools to lazy-load, process and save file trees. Built-in parallelism allows you to max out all threads and processes that Julia... -
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Tokenize.jl
Tokenization for Julia source code
Tokenize is a Julia package that serves a similar purpose and API as the tokenize module in Python but for Julia. This is to take a string or buffer containing Julia code, perform lexical analysis and return a stream of tokens. -
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UnROOT.jl
Native Julia I/O package to work with CERN ROOT files objects
UnROOT.jl is a reader for the CERN ROOT file format written entirely in Julia, without any dependence on ROOT or Python. -
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LatticeQCD.jl
A native Julia code for lattice QCD with dynamical fermions in 4D
This code enables you to perform lattice QCD calculations! A native Julia code for Lattice QCD. -
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Parquet.jl
Julia implementation of Parquet columnar file format reader
A parquet file or dataset can be loaded using the read_parquet function. A parquet dataset is a directory with multiple parquet files, each of which is a partition belonging to the dataset. -
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FinEtools.jl
Finite Element tools in Julia
FinEtools is a package for basic operations on finite element meshes: Construction, modification, selection, and evaluation of quantities defined on a mesh. Utilities are provided for maintaining mesh-based data (fields), for defining normals and loads, for working with physical units and coordinate systems, and for integrating over finite element meshes. -
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JDF.jl
Julia DataFrames serialization format
JDF is a DataFrames serialization format with the following goals, fast save and load times, compressed storage on disk, enabled disk-based data manipulation (not yet achieved), and support for machine learning workloads, e.g. mini-batch, sampling (not yet achieved). JDF stores a DataFrame in a folder with each column stored as a separate file. There is also a metadata.jls file that stores metadata about the original DataFrame. Collectively, the column files, the metadata file, and the folder... -
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TensorBoardLogger.jl
Easy peasy logging to TensorBoard with Julia
TensorBoardLogger.jl is a native library for logging arbitrary data to Tensorboard, extending Julia's standard Logging framework. It can also be used to deserialize TensoBoard's .proto files. The fundamental type defined in this package is a TBLogger, which behaves like other standard loggers in Julia such as ConsoleLogger or TextLogger. You can create one by passing it the path to the folder where you want to store the data. You can also pass an optional second argument to specify... -
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PDFIO.jl
PDF Reader Library for Native Julia.
PDFIO is a native Julia implementation for reading PDF files. It's a 100% Julia implementation of the PDF specification. Other than a few well-established algorithms like flate decode (zlib library) or cryptographic operations (OpenSSL library) almost all of the APIs are written in native Julia. PDF files are in existence for over three decades. Implementations of the PDF writers are not always to the specification or they may even vary significantly from vendor to vendor. Every time, you get... -
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FromFile.jl
Julia enhancement proposal (Julep) for implicit per file module
This package exports a macro @from, which can be used to import objects from files. The hope is that you will never have to write include again. FromFile is a Julia Language package. To install FromFile, please open Julia's interactive session (known as REPL) and press ] key in the REPL to use the package mode. -
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OpticSim.jl
Optical Simulation software
OpticSim.jl is a Julia package for geometric optics (ray tracing) simulation and optimization of complex optical systems developed by the Microsoft Research Interactive Media Group and the Microsoft Hardware Architecture Incubation Team (HART). It is designed to allow optical engineers to create optical systems procedurally and then to simulate and optimize them. Unlike Zemax, Code V, or other interactive optical design systems OpticSim.jl has limited support for interactivity, primarily in... -
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WAV.jl
Julia package for working with WAV files
This is a Julia package to read and write the WAV audio file format. WAV provides wavread, wavwrite and wavappend functions to read, write, and append to WAV files. The function wavplay provides simple audio playback. These functions behave similarly to the former MATLAB functions of the same name. -
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Feather.jl
Read and write feather files in pure Julia
Feather.jl provides a pure Julia library for reading and writing feather-formatted binary files, an efficient on-disk representation of a DataFrame. -
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SciMLTutorials.jl
Tutorials for doing scientific machine learning (SciML)
SciMLTutorials.jl holds PDFs, webpages, and interactive Jupyter notebooks showing how to utilize the software in the SciML Scientific Machine Learning ecosystem. This set of tutorials was made to complement the documentation and the devdocs by providing practical examples of the concepts. For more details, please consult the docs. To view the SciML Tutorials, go to tutorials.sciml.ai. By default, this will lead to the latest tagged version of the tutorials