The OpenOCS project is groupware software which allows groups to work on projects. Client/Server architecture written in Java with a MySQL database and PHP front end.
See http://sourceforge.net/projects/javadiff for Downloads.
JDiff is a JavaDoc doclet which emits an HTML report of all the packages, classes, methods, and so on, which are different (the "diff" part) when two Java APIs are compared. Great for reporti
"Draft" provides a collaborative design environment to assist in prototyping projects - software or other - in a graphical manner. It's written in Java and provides an interactive, animated UI framework to create rich content. Emphasis is on ease of use.
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The Microsoft Bytecode Engineering Library is a library written completely in Java that allows the user to parse, create, edit, and rewrite .NET assemblies. The code originally came from the University of Arizona. http://www.cs.arizona.edu/projects/mbel/
gcov-eclipse is an Eclipse plug-in that will extend CDT to provide code-coverage testing to C/C++ projects by using the gcov program. It will integrate into the CDT's launch and managed build system.